Apostichopus japonicus (Japanese sea cucumber): 139966345
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Entry
139966345 CDS
T10891
Name
(RefSeq) uncharacterized protein
KO
K19719
collagen type II alpha
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
ajj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139966345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
139966345
NCBI-ProteinID:
XP_071825350
LinkDB
All DBs
Position
4:complement(8434388..8457679)
Genome browser
AA seq
1270 aa
AA seq
DB search
MPAGLGYPQAMMAGEPGQRGPPGQAGLRGPAGLTGAPGEPGEQGPTGPVGLTGPAGSPGR
PGSAGKDGANGNPGPAGPSGPPGPAGQNGFPGPSGPKGHRGYSGRAGQKGERGDDGERGN
DGAAGSIGAPGPAGPMGSPGERGRTGPSGDTGPAGSDGAPGAQGPPGSAGIPGAPGVPGS
SGPKGDAGSPGATGPQGQQGSRGERGPEGQQGQAGLQGAPGMNGNPGAKGASGAPGAQGP
IGFSGLRGPNGAPGSQGPAGSKGDQGVAGAPGEQGEEGPTGLPGDVGPQGPPGANGASGE
RGPRGSTGPAGPQGPAGDRGQLGAPGSIGPAGAAGAKGETGARGGPGSPGSKGSRGEPGR
NGDPGLPGTRGLSGNPGKQGKDGSPGPPGPPGENGRQGATGATGQRGMPGAQGLTGAPGA
QGDRGGDGQVGPPGPAGPQGEVGDRGNPGPAGAPGSPGVAGERGAPGLQGPQGQQGPAGL
NGPQGESGAPGDAGPQGETGAPGNPGDRGERGGPGDRGPPGPSGRPGGRGVSGRAGQDGA
TGAPGPKGEQGPPGGPGLGGQQGPRGPPGPSGSRGPPGEDGDEGRPGPTGPAGPRGSIGP
IGPTGITGSPGEKGDQGSPGPAGAQGARGDAGARGANGPAGPQGFPGPAGRPGSPGARGE
TGPSGIRGETGPAGAAGATGDPGAQGPAGAVGAQGERGEAGNTGPQGPVGNPGIGGPQGN
QGPPGPAGQTGPSGAPGAPGERGDPGVAGRDGDQGPVGAPGASGEKGDRGSDGDIGSAGP
AGPPGPPGASGPLGIAGSMGPRGPPGAPGGPGEQGATGSPGSQGNRGSPGAIGAPGPAGA
AGANGQDGEDGRDGAQGPAGQRGEKGDTGATGNPGSQGGPGPQGAAGQNGAPGERGEAGA
PGATGPQGPAGQRGPAGPTGPTGPAGATGERGPSGPQGAKGHQGPTGLQGLTGPVGSPGD
TGVPGPPGTAGERGSPGNRGAAGMDGATGPRGFDGPEGPRGPPGSEGRQGSQGPPGPPGP
PGPPGTVQGFTYSQYPNQVVSGQDKGPSPYYYGDDANVDAKNKEPEILATLKDINNRFKA
LKQPSGDSKLHATRSCRNLFLDHPDKESGIYWVDPNLGCTDDAFQAFCDKTNKATCLTPE
THLVTNATWYTGKPKRIYYSSMRGGEKFTYAEKSQLVFLRLLSISAKQSVTFYCRNVAAN
LEFLNSREDVMRDYQILENTCQSQSDSWGRVVLDYETDITDNLPFEDFSVGDLGADNQEF
GLDMGKVCFA
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgccagctggtttgggatatcctcaagctatgatggctggagaaccaggccaacgtggt
ccaccaggacaggctggtttgaggggacctgccggtttgactggagcacctggtgaacca
ggtgagcaaggaccaactggacctgttggattaaccggacctgcaggaagcccaggacga
ccaggatctgcaggaaaggatggtgccaatggtaacccaggaccagcagggccttcagga
ccacctggaccagctggacaaaatggattcccaggaccatccggccctaagggacacaga
ggttactctggacgagcaggccaaaagggagagagaggagacgatggtgagcgtggtaac
gatggagcagctggatccattggagccccaggacctgctggtccaatgggttcccctggt
gagagaggccgaactggaccttctggtgatactggacctgctggatctgatggtgctcca
ggtgcccaaggacctccaggaagtgctggaattccaggagccccaggtgtcccaggaagt
tctggacctaaaggtgatgccggatctccaggtgctactggcccacaaggccaacaggga
agccgtggtgagcgtggcccagagggacaacagggacaggctggactccaaggagctcca
ggaatgaatggtaacccaggagctaagggagcatctggcgcacccggagcccaaggtcct
atcggattctcaggactacgtggacccaatggagccccaggaagccaaggacctgctgga
tctaagggagaccaaggtgtcgctggtgcccccggtgaacaaggtgaagaaggacccacc
ggactacctggtgatgttggcccacaaggcccaccaggagcaaatggagctagcggcgag
aggggaccacgtggttcaactggacctgctggacctcaaggtccagctggagatcgaggc
caactcggagccccaggttccattggacctgccggtgctgccggtgcaaagggagaaact
ggtgctcgaggtggaccaggatccccaggatccaagggttctcgtggtgaaccaggacgt
aacggagacccaggacttccaggaacaaggggactgagtggaaacccaggcaaacaaggc
aaagatggctctccaggaccaccaggcccaccaggcgagaacggtcgtcaaggagccact
ggagcaacgggtcagcgtggtatgccaggagcgcaaggtttgactggtgccccaggagct
caaggtgatcgtggtggtgatggacaagtaggtccccctggtccagctggccctcagggt
gaggttggagatcgtggtaaccccggacctgctggtgctccaggttctccaggtgtagct
ggtgaacgtggtgctcctggtctgcaaggacctcaaggacaacagggtccagctggtcta
aatggcccacaaggtgaatctggtgcccctggtgacgctggcccacaaggtgaaactggt
gcccctggcaaccctggtgatcgtggtgagcgtggtggcccaggtgaccgtggcccacca
ggtccaagtggtcgtccaggtggacgtggtgtttctggacgtgctggacaagatggtgcc
actggtgctccaggaccaaagggagaacaaggacccccaggaggcccaggtttgggaggc
caacaaggtcctcgtggaccaccaggaccaagtggatctcgtggaccaccaggtgaagat
ggtgatgaaggacgaccaggcccaactggacccgctggcccaagaggctcaattggaccc
attggaccaactggaattacaggaagcccaggtgaaaagggtgaccaaggatctccagga
cctgccggtgcccaaggtgctcgtggtgacgctggtgctcgtggtgctaacggcccagcc
ggaccacaaggattcccaggtcctgctggacgaccaggatctcctggagcccgtggagag
accggaccttctggtatccgtggtgaaactggacctgctggtgctgccggtgctactggt
gatccaggcgctcagggaccagctggtgctgtaggtgctcaaggagaacgtggtgaagct
ggtaacactggaccacagggtccagtcggtaacccaggtattggtggaccacaaggtaac
cagggaccaccagggcctgctggacaaactggaccttctggagccccaggtgccccaggt
gagcgtggcgatcccggtgtagctggacgcgatggagaccaaggaccagtcggagcacca
ggtgctagtggtgaaaagggagaccgtggaagcgacggtgatattggatctgctggaccc
gctggacctccaggcccaccaggagcctctggacctctcggtattgccggtagcatgggc
ccacgtggacccccaggagcaccaggcggtcctggtgaacaaggtgcaactggttcccca
ggatctcaaggtaaccgtggttctcctggtgctattggtgctccaggacctgctggtgca
gctggtgccaatggacaagatggtgaagatggtcgtgatggtgcccaaggcccagccgga
caacgtggtgagaagggagacactggtgcaaccggtaacccaggatctcaaggtggccca
ggacctcagggggctgctggacaaaatggtgccccaggagagcgtggtgaagctggtgcc
ccaggcgccactggaccccaaggacctgctggacaacgtggacctgctggaccaactggc
ccaactggacctgctggtgcaactggtgaacgtggtccatctggcccacagggtgctaaa
ggtcatcaaggacccactggtctccaaggtttgacaggacctgttggttctccaggtgac
actggtgtcccaggacccccaggaacagctggcgagagaggatcaccaggtaaccgtggt
gctgcaggtatggatggtgctactggcccccgtggtttcgatggcccagagggtccacgt
ggtccaccaggatcagaaggacgacagggttctcaaggtccaccaggaccaccaggtcca
cctggtccaccaggaacagtgcaaggattcacctactcacaatacccaaatcaagttgtc
agtggacaagataaggggccaagcccatactattacggagatgatgcaaatgttgatgcc
aagaacaaagaaccagaaatcctggctaccctgaaggacatcaacaaccgtttcaaggcc
ctgaagcaaccatctggtgatagcaaactccatgccacacgctcttgcagaaaccttttc
cttgatcacccagacaaagaatcaggaatttactgggttgatcctaatctcggttgcacc
gacgatgctttccaggctttctgtgacaagactaacaaggcaacatgcttgactccagaa
acacaccttgttacaaatgccacctggtacacaggcaaacccaagaggatttattacagc
tctatgagaggaggagagaaattcacatatgctgagaaatctcaactggtcttccttcgt
ttgctctcaataagcgccaagcagtctgtgacattctattgccgaaatgtagctgctaac
ctagaattcctgaacagcagagaagatgtcatgagggattatcaaatccttgaaaatacc
tgccagagccagagtgactcatggggtagggtcgtattggattacgagacagatataact
gacaacttaccatttgaggacttctcagttggtgatctaggtgcagataaccaagaattt
gggttggatatgggcaaagtatgcttcgcatga
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