Apostichopus japonicus (Japanese sea cucumber): 139966775
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Entry
139966775 CDS
T10891
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139966775
09123 Folding, sorting and degradation
03018 RNA degradation
139966775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139966775
03041 Spliceosome [BR:
ajj03041
]
139966775
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139966775
mRNA degradation factors
5'-3' decay
Lsm complex
139966775
Spliceosome [BR:
ajj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139966775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
139966775
NCBI-ProteinID:
XP_071826225
LinkDB
All DBs
Position
4:20503588..20508383
Genome browser
AA seq
134 aa
AA seq
DB search
MYHLVREQTLEWSEVVSFIGLYLFTVFPDKMAQQQGEKKKKESILDLSRFIDKSIRVKFQ
GGREVSGVLKGYDPLLNLVLDGATEYLRDPDDPFKITDDTRELGLTVCRGTSVVLICPSD
NMEPIANPFLQQDG
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atgtaccacctagtccgcgaacaaacgcttgaatggtctgaagtagtttctttcataggg
ttgtacttgtttaccgtatttcctgacaaaatggcacagcaacaaggtgaaaagaagaag
aaggagagtattcttgacctgtccaggtttattgacaaatctattagagtcaagttccaa
ggtggaagagaagtatctggagttcttaaaggctatgatcctctccttaatttagtattg
gatggagccacagaatatctcagagatccagatgatccatttaaaatcacagacgacaca
agagaacttggattgacagtttgcagaggaacatctgtagtccttatctgtccttccgat
aacatggaacccatcgcaaatcctttcctccaacaggatggttga
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