Apostichopus japonicus (Japanese sea cucumber): 139967384
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Entry
139967384 CDS
T10891
Name
(RefSeq) DNA polymerase lambda-like
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03410
Base excision repair
ajj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139967384
03450 Non-homologous end-joining
139967384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139967384
Enzymes [BR:
ajj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
139967384
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
139967384
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
139967384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
RTT107_BRCT_5
BRCT
Cdd1
BRCT_2
DUF4168
Motif
Other DBs
NCBI-GeneID:
139967384
NCBI-ProteinID:
XP_071827209
LinkDB
All DBs
Position
5:4940651..4961914
Genome browser
AA seq
569 aa
AA seq
DB search
MEKKRVLEKVQGGPLKCRKIDQSSSPDKEQTDTIFSGYQVFVLSSGLGKARTDIFNKQLS
KQGAEVCQRYNQSVSFVIVDEKMTSERFLKITNISQDDFTSGNAVVVKANWLSTCLSEEK
VINTSEYELFIDFKTKDSEKPGKGTVNDTEAKKMTKKTFGEVGETKNVAKVGARTKSPKK
TKEEVGYDSEDSNYVPSDEDEGEAEMEEAGERSTSNQSTPTTSPTKLPRGNWVCAKPSTS
QSVNLNEHITEKLEVLMNAYKNTKDQWRALGYRKAIGALKSHPRAVTTWEEASAIPGIGS
RLADKIAEIVQSGHLRKIDHVCQGEEAKILDIFNNIWGVGPTVAQEFVQLGYKTLEDVRT
KAKLNKQQQIGLSHYYDFLDRMPRDEAAEIGKLVEDATKEFNPNFVCTTCGSFRRGKKTC
GDVDVLISHLDGHSHKGILFKLLEKLHSTGFLTDDLIKVEERGEQKKYMGVCRLPGENRK
HRRLDIIVAPYNEYPCALVHFTGSDHFNRSIRALAVKKGMSLSEHALRTGVIRRGKDKIH
EGSPLLVTSEEDIFKHMGLEYRPPHERDY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaaagagtccttgaaaaagtacaaggaggacccttaaaatgtagaaaaata
gaccaatctagttcccctgacaaggagcagacagatacaattttctcaggatatcaggtt
tttgtactgtcttctggattaggaaaagcaagaacagatatcttcaataaacaactgtcc
aaacaaggagctgaagtttgccaaagatacaatcagagcgtgtctttcgttatcgtcgat
gaaaagatgacctcggaaagatttttaaagataacaaatatttctcaagatgactttaca
tctggtaatgcagtagtcgtgaaagctaattggttgagcacgtgcttatcggaagagaaa
gtcatcaacacttcagagtatgaactgttcatagattttaaaactaaagatagtgaaaag
ccaggcaagggtaccgtaaacgatacggaagcaaagaaaatgacaaaaaaaacgtttggt
gaagtcggagagaccaaaaatgtagcaaaagttggtgctcgtacaaaatctccaaagaaa
actaaagaagaagtcggctatgacagtgaagatagtaactatgttcccagtgatgaagat
gaaggtgaagcagagatggaagaggctggagagaggtcaacgtccaaccagtccacacca
acgacatccccgactaaacttccgagaggtaactgggtctgtgctaaaccatccacatca
cagtctgttaatcttaacgaacatatcacagaaaagctggaggttttaatgaatgcatat
aagaacaccaaagaccagtggcgagccttgggttaccggaaagccatcggtgcgttgaag
tcacaccccagagcagtcaccacctgggaggaagcaagtgccatccctgggattggctct
cgactggctgataaaatagccgagatcgttcagagcggtcacctccgtaaaattgatcac
gtctgtcaaggagaagaggctaagatccttgacatattcaacaacatctggggcgttgga
cccacagtcgctcaagagtttgtacaattgggttataaaacgttggaggatgtaagaacg
aaggccaaattaaacaagcaacaacagatcggcctcagccattactacgactttcttgat
agaatgcccagagacgaagcggcagaaattggcaaattggttgaagatgctactaaggag
ttcaacccaaactttgtttgcaccacttgtggatctttccgacgtgggaagaaaacttgc
ggagacgtcgatgtcttgatatcacatttagatggacattctcacaaaggaattctcttc
aaattgttggaaaagttgcattccacagggtttctgaccgacgacttgatcaaggtcgag
gagagaggggaacaaaagaaatacatgggcgtctgtcgactacctggagaaaacagaaag
caccgtcgtttggatatcatcgttgctccgtacaacgagtacccgtgcgctttagtgcac
ttcaccggttccgatcacttcaacaggtcaattcgagcactcgccgtcaagaagggtatg
tcgttatctgaacacgctttgaggactggcgtcatcagaaggggaaaagataaaattcat
gaagggagccctctattggtcacgagtgaagaagatattttcaaacatatgggtttagaa
taccgccctccgcacgaaagagattattga
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