Apostichopus japonicus (Japanese sea cucumber): 139967432
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Entry
139967432 CDS
T10891
Name
(RefSeq) huntingtin-like isoform X1
KO
K04533
huntingtin
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139967432
04131 Membrane trafficking [BR:
ajj04131
]
139967432
03029 Mitochondrial biogenesis [BR:
ajj03029
]
139967432
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139967432
Membrane trafficking [BR:
ajj04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
139967432
Mitochondrial biogenesis [BR:
ajj03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
139967432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_C-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT_GCN1
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
139967432
NCBI-ProteinID:
XP_071827307
LinkDB
All DBs
Position
5:complement(5275743..5328917)
Genome browser
AA seq
2991 aa
AA seq
DB search
MNKPVSMSNMEKLARAFEALKSHQQGSSSDTVDSKKSQLSKKEYIQHLSIVADGICASNF
KTVADFPKFLAISFELIFVACNDENSDIRLKAEECLNKIIKASLDTSLSRTQLELYKEIK
KNGPSKSLRAALWRFAEVASFIRPQKCRPYIINLLPCIAKISRREEDAIQEALASFTEKV
LPVLGSFLTDTEVKNLMKVLYPNLKSPSAATRRSAAKILVLICHHGRKTSTYFSMLVQTL
LMICVPVTPNLSSHMCLGLLQCLRNALPYLTETGNLDQGLRGSIGVVKAEEKAEVTTKQL
VQIYEFTLHCAQSSDHNVVTASLETLQQLLRTPPPSLKTTLLTPGSIPEKSINQEGSPSD
SQDVSKDGDTSQVFSLDSGLDDDQVSLNTSLASKSELSSTANLSDVGLETPDTSTLSSYQ
DSLLESDLGESSSEQGEIITADEVDEYSNVNIGTEEEIGHSEEIDVSKGLTYMEKERKSV
TDGEEEEEASPEKEEEADVDEKEEKEANQDGEILEGDIGCYTDEEIPLRHLMRLLTSSFL
LTGEKGCLIRDRRVRVSVKTLAMSCISNIAGMVPELFFIQLFKSSIKGKEADQYVRDVLL
YCEHSDHQLRSQTAIIIGHFIHAALRKSHCQFDTWSLDTAQQTESEPFHLSTLVTMLRNS
LKDESSMTIRFTCQAVKVCIADLCMSSYDYLGAQLTYDLLEVGKSSYWLLQVELLDVIGG
LNFRLLNFIETQEKLYSNHLVKSQRIQEALLEDVVMTLLGSDDLRVRTKAAETIIKIIPK
LYFPDDVVHSDSVAAVAKEEVRLGLGDIILDLPNYSQLPTVTMKDLSLFQEGQAADEPEL
EGAFSRIINMLLQRLNGQCDKFLTNGVIQALCLLGYEYSAFLYPSSWNCATNMSALSKSS
SGRPVKRQNSGKGSGSGMSSTGSVGSHVSLEELCQGSGCGPLPLVMGLLTSSTLMLDLAA
HQDLLTTATNLLIGAAYQSMKTGPSKAQAADVNLEDRDSWQCLQNRLLVPLAQQLLTHIV
RLLGICHHVIEGKEPGPPKNPVVPALPSLPPAPSLSPIKKRTIKFGRDKSKDTGELQAQG
SPSKLEQADKSDSSEEKKVPKSTLGQFHQHQHYMKLYDTLKASFNTYKVSLDLSKADKVQ
VFIKFVLNALSQLLEVTSLAEIGKYTDEILSYLKSCVSIDSSHTILSVEQLLRALFSTNL
VSQSEYSTNSLPRTPGKAARLTSMVRPGLYHHCFMAPYTQYTQSLASLGPRLTHTGVEAE
KHSTGVFGWIKLKPDKKANTKEKTSVHNYIRLFEPLVIQALKQYTVTSSVILQQQVLHLL
GQLVQLRVNYCLLDSDQIFLGFILKQFEHMEEGQIRDYQLLIPHIFHFLVMLSHERYHSK
AVIALPQIIQLTGGIMASGQRASTHIIPAFRPLVQDLFVVKGQNKSESSKELDIMREVVV
SNLLTLIKYHEVLELLVPVLYQAHRESEEKWKRLSRQVVDLLMPLLARQEVDIDTAEALS
TLHHLLGTVSPIALRPVDILLKALFLVPCPLASRKSVQRWLALVLVLLCMLTTQSKEETV
LSRLKELGLTVDLFVCPEDEEKDKDDDLVTRMPNKPEDIFARFLLQTIGFVASSLTEQFT
QPKMIGEDDHFLAQEAARLLLYLTHMFKSGAFRKVPLAMSAMLKASSHRCWFSLEQLNSC
FVGLIATQPLIVIEWCQLLLIFGCSEKDQWMDFLRTPKRPPLSKSLSQGSLDHLEQSDEV
KLSMSEEIVKRGALVLFSDFVCESYGDAEPMTWLIVNHVNDLVQLSHEHPVQYLISAIHR
NSAASGLFVRAINLRFLHFNKPRLVQSALQCLEGIHLSQSGALLSLLIKSFLSCHWLALT
KLADGLACRRIEMMLGENVEGASQMSVDDAEKLLKFLEDDGLSKRHPRLLVLLQKYKSVL
AGGSSQTGSSGPSKAKLLHLPRDTNKEWYKSVVTAVCIHQDSVLPTSKVCAQLLSHLTVE
DILSIMVAQEFDFYHLPECISLGLELSVTEASPPTITKENVVKPQEEETEKQTLSSQEKP
IQSALLEASIGSLMTQIQEFVHQLPEPHRVLRDLEEQTDDPLGEEEGADRDYIEQMKEVF
HSTHHATFLRWMSGAIKEYLIATEMLKLDVAESSRENVCRIVITCVEYVYWSLLHRQIIP
TVQLKHTLEALSLVLTNTQLRAAFHSEDHVSYTNSLVTCLHGLIFKVFLQAKPLDGGSAM
LQGSHSPDFESNMETCHQVASLVDLIQPSAAANSDQPTIYLLPQFLQQPIRDVITCLARL
PLVNTFARTPPLAWKMGWSPSPMEQQTTFLPPCPLDILKERDVLAEFVFRINTIGWTSRQ
QFEETWAALLGVIGSPDVIENVEEDIEHSQSTCLAVRAITSLLIDTRLRPQPGNPTNSRQ
LCIPRHEHLPFLSSEKGKKLAHLRGILERKVRHLFKDRFSPNSTTDFTSHTSEEVYDDLL
RSNQDQDIQDRCFTVGQLSVHGIWAINNLLPPLVDEHGVESPLPSPKIPPTKAAKGNAKL
DVHSCLMLLLEVYGQWLSPIATPRTPLMQLCETVKSVLVISDIFTERSQFEWMFDTLLEV
NKYHYVEDEIINQYAVPGICKAAAILGMDKDVSEKVSKLLEVTLKSNHLPSRVGALYGAL
YLLESDVIEDVNVFIPVLVEYINKNLSQISQSSPGLSQKHTLVMLAVTFYLMEYYADILA
GSPFTKTVLMHLVNMVSMSDDTTSLLIYKVILLGLERLLVAKALSAHESDQLRKLAADRL
CLPSSPVHALPALGLLLTSSYTREELSRRTFPAGDQPDDDVDSSDPEEFVQALERQSILF
DRIRKGYPTEASLVAEVLPTFLEDFFSPQDVMNKVIGEFLSNQQPHPQLMATIVYRVFAG
LHRQGQSELVQDWVLLSLSNFTQRTPVAMAIWSLSVFFMCASTNQWVQNLLPLVLSRMGK
LDTLDRELFVLFAKDFYHGQITESSARRAFVSTFQTVCASEIAYSALLNQL
NT seq
8976 nt
NT seq
+upstream
nt +downstream
nt
atgaataagccagtcagtatgtcgaatatggagaagctggcaagagctttcgaggctctg
aaaagtcaccagcaaggctcttcgagcgatactgtggattctaagaaaagtcagctttct
aagaaggagtacatacagcacctgtcgattgtcgctgatggtatatgtgcttctaacttc
aagactgttgctgatttcccaaaatttttggcaatctcatttgagctgatttttgtcgcc
tgtaacgacgaaaattctgacataaggctgaaagcggaggaatgtctgaataagatcata
aaggcatctctcgataccagtctaagtaggacgcaactggaattgtacaaagaaattaaa
aagaatggaccatccaagagcctgcgtgctgcactctggcgatttgcagaggtggcgtcc
ttcatcagaccacagaagtgtcggccgtacatcatcaacctgctgccgtgcattgccaag
atatcgagacgcgaagaggacgcaattcaggaagcacttgcatctttcacggagaaggtg
ttaccggtgctcggatcatttttgactgacacggaagttaaaaacttgatgaaagtcttg
tacccgaatttgaagagtccgtctgcagctaccaggagatccgcggctaagatattagta
ttgatttgtcatcacggtcgtaagacatctacgtacttctccatgctggttcagactctc
ctcatgatttgtgtgcctgtaacccccaatctcagctcacatatgtgccttgggttactg
cagtgtcttcgcaatgcactcccatacctcaccgagacgggtaacctagatcaaggcctc
aggggcagcataggggtcgttaaagccgaggaaaaggcagaagtaacaacaaaacaactt
gtacagatctatgaattcacgttacactgcgcacaaagtagtgaccataatgtggtgact
gcttccctggagacacttcagcagctgttgagaacccctcccccgagcctgaagaccact
ctcctcacgcctgggtccatcccagaaaaaagtatcaaccaggaaggatctcccagcgac
agtcaagatgtgtccaaagatggagacacttctcaagttttctccttggattctggtctg
gacgacgatcaggtgtccttgaacacgtcactggcgtcaaagtccgagctctcctccacc
gctaacctgtccgacgtcggtttggagacgcccgacacgtcgactctctcgtcctaccaa
gattctctcttggagagcgatctgggagagtcgtcgtcggagcaaggagagatcatcacg
gcggacgaggtcgacgaatattccaacgtcaacatcggtaccgaggaggagatcggtcac
tcggaggagatcgacgtgagcaaaggtctgacgtacatggagaaggagaggaagagcgtc
acggatggtgaggaggaggaggaagcaagcccagagaaggaagaagaggcagacgtggac
gagaaggaggaaaaggaggcaaaccaagatggtgaaatactagagggagacattggctgt
tacaccgatgaggaaattccactgagacacctgatgagactgctgacttcatcattcctc
ctcacgggtgagaagggctgcctgatacgagaccggagagtcagggtcagcgtgaaaact
ctggccatgagttgcatcagtaacatcgctgggatggtgccagagctgttcttcatccaa
ttgttcaaaagtagtatcaagggaaaagaggccgatcaatacgtaagggatgttctgttg
tactgcgagcacagcgaccaccagctccggtcacagacggctatcatcatcggtcacttc
atccacgcagccctgaggaagtctcactgccagtttgatacttggtcgttggatactgct
caacagaccgagtcagaacctttccatctatctacgctggtcacgatgcttcggaattct
ctcaaggatgagtcttcgatgacgatacgcttcacctgtcaggccgtcaaggtctgtatt
gcagacctctgcatgagttcttacgactacctgggggcccagttgacctatgacctgctg
gaggttggcaagagttcctattggctcctccaagtagagctactcgatgtgattggtggt
cttaattttagacttttgaacttcatcgaaacgcaagaaaagttgtacagtaaccattta
gtaaagtctcagaggattcaggaagcactgttagaggacgtggtgatgactctcctgggc
agtgatgacctcagagtcaggaccaaagctgccgagactatcatcaagatcattccaaag
ctttactttcctgatgatgtggttcactcggattctgtagcagctgtcgctaaggaggag
gtcagactagggctcggcgatatcatcttggacttaccaaattacagccagctacccaca
gtgaccatgaaggatctctcactctttcaagaaggccaggcggcggatgagcccgaactc
gagggggccttctcgcgcatcattaatatgctacttcagaggctgaacgggcagtgcgat
aaatttctgacgaatggtgtcatccaagccctttgtctcttgggctacgagtattcagca
tttctgtaccctagttcttggaattgtgcgaccaacatgtcagctctgtccaagagttct
tccggtcgaccggtgaagaggcagaacagcggcaagggttctggatctggaatgtcgagt
actggcagtgtaggaagtcatgtgagtctggaagagctgtgtcaagggtctggctgtggt
cctctaccactggtcatgggtcttctgacatcgtcaaccctgatgctggacctcgctgct
catcaggacctactgactacagcaacgaaccttcttatcggagccgcttatcagagcatg
aaaacgggcccatctaaggcccaggcagctgatgtcaacctcgaggacagggactcctgg
cagtgcctacagaataggctcttggtcccactggcccagcaactattgacccatatagta
aggctcctgggaatctgtcatcatgttatcgaaggcaaagaaccgggacctccgaaaaat
cctgtggtgcctgcgttaccctccttgcctcctgcgccatctctcagtcccatcaagaag
cggactatcaagtttggcagagataagagtaaagatactggggagctacaggcccaagga
agtcctagtaaactggaacaagcagacaaatcggattctagtgaagagaagaaagtgcca
aagtcaactctcggacagttccaccaacatcagcactacatgaaactctacgatactctg
aaagcatccttcaacacgtacaaggtatcattggatttatcaaaagcagacaaggtgcag
gtgtttataaagtttgtcttaaatgccctgtcacaactactagaagtcacatcgcttgct
gagattgggaagtacactgatgaaattctttcgtatctgaagagttgtgtttccatagat
tccagtcacacaatactctcagtggaacagttactgagggcgctgttttcaacaaacttg
gtcagtcagtcagagtactccacgaacagtctaccccgtactccgggcaaggctgcgagg
ttgacatcgatggtccgacccggcttgtaccaccactgcttcatggctccatacacccag
tacactcaatctcttgccagccttggaccacgactgacacatacaggtgtagaggctgaa
aaacatagcacaggggtatttggatggataaaactaaaaccagacaaaaaggcaaacacc
aaggagaagacatctgtacataactacatcagactctttgagccgttggtcatccaggca
ctgaagcagtacacggtgaccagctctgtcatcctacaacaacaagtacttcatctactc
ggacaactggtacagctgagggtcaactactgcctcttggattcagatcagatatttcta
ggttttattttaaagcagtttgagcacatggaagaaggtcagataagagactatcaactc
ctgattcctcacatctttcatttcttggtgatgttatctcacgagcggtaccattccaag
gccgtcatagccctccctcagatcatccagttgacaggtggtatcatggccagcggccag
agagcttccactcacattatcccagcgttccgtcctctggttcaagacctgtttgtggtc
aaaggtcagaataagtctgaatcgtccaaggaattggacatcatgagagaggtggtggtt
tctaatcttctaactctcatcaagtatcacgaggttctggagctgcttgtaccagtcttg
taccaagcgcaccgggagagcgaagagaaatggaaacgattatcaagacaggtggtggat
ctactgatgcctttactggccagacaagaggtggatattgatacagccgaggccctctcc
actcttcatcacctccttggcaccgtctctcccatcgcactccgcccagttgacatcctc
ctcaaggctctgttcctcgtcccttgtccgttggccagccgtaaatccgttcagcgttgg
ttagccctggtgctggttcttctgtgcatgctgacgacgcagtccaaggaagagacggtt
ctctcgcgtctcaaggagctcggtctcaccgtggatctcttcgtctgtcccgaggacgag
gagaaggacaaagacgatgacttggtgaccagaatgccaaacaaaccagaggacatattt
gctaggttcttgctgcagaccatcgggtttgttgcttccagccttacagaacagttcacc
caacccaagatgataggtgaagacgatcacttcttggcccaggaagccgctagactgttg
ctttatctcactcacatgtttaaatcaggggctttcaggaaggttcctctagcaatgtcg
gccatgctgaaagcatcttctcatcgttgctggttttctctggagcaactcaactcatgt
ttcgtgggcctgatagcaactcaaccgctgatagtgattgaatggtgtcagcttctcctg
atttttggatgcagcgagaaggaccagtggatggatttcttacgcacccctaagagaccc
cccctctccaagtccctctcccaggggagtctagatcacctggaacaatcggacgaagtt
aaactatccatgtccgaagagatcgtcaagagaggggccttggtactcttctctgacttt
gtttgtgagagctacggagatgcagaacccatgacctggctgatagtaaatcatgtcaat
gatctggtccaactctctcacgaacaccccgtgcaatatcttatcagtgcaatacaccgt
aactcggccgcgagcgggttattcgtgcgcgcgatcaacctccgttttcttcactttaat
aaacctcggttggtccagagtgcgttgcagtgtctagagggaattcatctcagccaatca
ggagccctcttgagtctgctcatcaagtcgttcctctcttgccattggttggccctgacg
aagctcgccgacggtttagcctgccggcgtattgaaatgatgctcggtgagaatgtggag
ggcgccagtcaaatgtctgttgatgatgcagagaagctactcaagtttctggaggacgat
ggtttaagcaagagacatccacgattacttgtactcttgcagaagtacaaatcagtactg
gctggaggctccagtcagactggatccagcggtccttctaaagcaaagctgcttcatctt
ccaagagacaccaataaagaatggtataagtcagtggtcacagctgtgtgcatccatcaa
gactctgtcctaccaaccagcaaggtctgcgctcaacttctgtctcatcttactgtggag
gatattctcagcataatggttgctcaggaatttgatttttatcacctcccagagtgcatt
tcactcggcttagaattatcggtgactgaagccagtccaccgacgattaccaaagaaaac
gttgtgaaaccccaggaggaggaaacagagaaacaaacgctctcttcacaagagaagcct
atccagtcagcacttctggaagcctccattggtagtctcatgactcagattcaagagttt
gttcatcagctaccagagcctcatagggtactaagggacctggaggagcagacagatgac
ccactgggggaagaggaaggggctgatagagactatatagagcaaatgaaggaggtcttc
catagtacccatcatgcaacatttctaaggtggatgtcaggtgccatcaaggaatacctt
atagccacagagatgcttaaactagacgttgctgagtccagcagggagaatgtgtgtagg
atagtaataacttgtgttgagtacgtgtactggagcctactacatcgacagataataccc
accgtgcagctgaaacacactctggaggccctgtcgttagtcctaaccaatacccaactg
agggcagcctttcattctgaagaccacgtctcgtacaccaactcgttggtcacctgtttg
cacggattgatcttcaaagttttcttgcaagctaaacctctggatggagggtctgccatg
cttcagggttctcacagtcctgattttgaatccaacatggagacatgtcaccaggtggcc
agcttagtggatctcatccagccatcggctgcagccaatagtgaccagcctaccatctac
ttactacctcagttcctgcaacagccaatcagagatgtcatcacatgcttagctcgtctg
ccattggtcaacaccttcgctaggactcctccacttgcttggaagatggggtggagtccc
agtcctatggaacaacagacgacattcctcccaccttgccctttggatattctcaaggag
agggatgtgttagccgaatttgtcttcagaatcaacacgataggttggacttcaagacaa
cagtttgaagagacctgggctgcccttcttggtgtcattggatctccagatgttattgag
aatgttgaggaggatatcgaacatagccaatcaacctgtctggcagtgagagctattacg
tcattgctcatcgacacaagactccgcccacagcctggcaatcccaccaatagcagacaa
ctatgcattccaaggcacgaacaccttccattcttgtcgtcagaaaagggcaagaagcta
gcccatctgcgagggatcctagagaggaaagtgagacatctgttcaaagacaggttctcc
cctaattcaacgacagattttacctctcatacctcggaggaggtatacgatgacctcctg
aggtcaaatcaagaccaagatattcaagatagatgcttcactgttggacagttatcagtt
catggcatctgggccatcaacaaccttctcccgcctctcgtagacgagcacggagtagag
tcgcccctgccgtctcccaagataccacccaccaaagcagctaaaggcaatgccaagttg
gatgtccattcctgcctcatgttactcctggaggtctacggccagtggttgtcgccgata
gccactccccgtacccctctcatgcagctctgcgaaacggtcaaatccgtgctggtgata
tctgatatcttcacggagaggtcccagtttgagtggatgttcgacaccctgctagaggtg
aacaagtatcactacgtagaagatgaaataatcaaccagtacgcagtaccagggatctgt
aaagcagctgctatccttggcatggataaagatgtctcagagaaagtcagcaaactcctg
gaggtgacactcaagagcaaccacctaccgagccgagtaggtgcattgtacggcgccctc
tatctgttagaatccgacgtcatcgaagacgtgaatgtcttcatcccggtcttggtagaa
tacatcaataagaacctgtcacaaatatcacaaagtagcccaggcctgagtcagaaacac
accctggtgatgttagccgtgaccttctacctcatggaatattacgccgacatcttggct
ggcagtccgttcacgaagactgtcctcatgcacctggttaacatggtctctatgagtgat
gacacaacctctttgttaatctataaggtcatcctcctcggtctagagaggttgctggtt
gctaaggccctcagcgcccatgaatccgatcagctcagaaaactagcagcagacaggttg
tgtctaccatcatcaccagtccacgctcttccagcgttagggctgttgctgaccagctcg
tacacgagggaggagttatccaggagaaccttccccgctggagaccaaccggacgatgat
gtcgattccagcgatccagaggagtttgtccaagccctcgagagacagtcaatactgttt
gacagaataaggaaaggttatccgacagaagctagtctggtcgccgaggtcctgccaacc
ttcctagaagatttcttctctcctcaggatgtgatgaataaagtcatcggggagtttctc
tctaaccagcaaccccatccacagctgatggccacaatcgtctacagggtatttgcgggt
ctccatcgtcaaggccagtcagaactcgtccaggattgggtcctactctcgttgtcaaat
ttcacccagcgtacacccgttgccatggcgatatggagcctctccgttttcttcatgtgt
gcttccaccaatcagtgggttcagaatctacttccgttagtactgagtcgtatgggtaag
ctggacaccctggacagggagctgtttgttttatttgccaaagatttctaccacggtcag
atcacggagagttcagctcgccgagctttcgtgtccacgttccagacagtctgtgcatct
gaaattgcgtacagtgcgttattgaaccagctgtga
DBGET
integrated database retrieval system
