KEGG   Apostichopus japonicus (Japanese sea cucumber): 139967605
Entry
139967605         CDS       T10891                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
ajj  Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03013  Nucleocytoplasmic transport
ajj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ajj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139967605
  09122 Translation
   03013 Nucleocytoplasmic transport
    139967605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ajj03019]
    139967605
   03041 Spliceosome [BR:ajj03041]
    139967605
Messenger RNA biogenesis [BR:ajj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     139967605
Spliceosome [BR:ajj03041]
 Complex C
  Other components
   EJC/TREX
    139967605
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    139967605
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd RMC1_N Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_Vps41 eIF2A WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st B-prop_COPA_B_2nd Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_HPS5 Tricorn_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_ELP1_1st PD40 Beta-prop_ACSF4 Cytochrom_D1 PROPPIN Beta-prop_WDR41 Beta-prop_DCAF12 Beta-prop_DCAF4 Beta-prop_NWD2_C YNCE Rav1p_C
Other DBs
NCBI-GeneID: 139967605
NCBI-ProteinID: XP_071827670
LinkDB
Position
5:complement(10389154..10400083)
AA seq 323 aa
MTNHEVEKLKDYFQQNDRTKEYSFHIAKVHSVAWSCDGKMLASGSFDKTVNVYLLDSDKD
RLIREHTYKGHTDSVDQLCWHPSDPSLFVTASGDKTVRIWDWRSSKTIASISTKGENINI
CWSPDGQTIAVGNKEDLVTFIDFKGSKIQYEQQFKHEVNEISWNNDNDLFFLTSGQGSIN
VLSYPALKPLDMLNAHPANCICLKFDPTGKYFATGSADALVSLWDVAELVCVRTFSRLEW
PVRTISFSYDGKLLASASEDLMIDIAYVESGEKVAEVKCETPTFTVAWHPKKHLLAFACD
DKDKYNSEREAGSIKVFGFPKES
NT seq 972 nt   +upstreamnt  +downstreamnt
atgacaaaccacgaagtggaaaaattgaaagattactttcagcaaaatgatcgaacaaaa
gaatacagctttcacatagcaaaagttcattctgtggcttggagctgtgatgggaaaatg
ttggcttctggttcttttgacaaaacagtaaatgtttatttgcttgactccgacaaagac
cgcttgattcgagagcatacatacaaggggcacacggacagtgtggatcaactctgttgg
cacccatctgacccttctctctttgtgactgcgtctggggataaaacggtccgtatatgg
gattggagaagttcaaagacgatagccagcatcagcactaaaggagaaaatatcaatatc
tgttggagtccagatggccaaacaatagcagttggcaacaaggaagatctggtcaccttt
attgatttcaagggaagcaaaatacagtatgaacaacagttcaaacatgaagtcaatgag
atctcatggaataacgacaacgatctgtttttcctaaccagcggtcaaggttccattaat
gttctaagctacccagctcttaaacctctggatatgctaaatgcacacccagccaattgt
atctgtctcaagtttgatccgaccgggaagtactttgccacaggaagcgctgatgccctc
gttagcctttgggatgtcgcagaactagtttgcgtcaggactttctccagactcgagtgg
ccggtgagaacgatcagtttcagttacgatgggaaactgttagcgtcagcctcggaagat
ttgatgatcgacattgcgtatgttgaatccggagagaaggtagccgaggtaaaatgcgag
actccgacattcacagttgcctggcacccaaagaaacacctcctggcctttgcttgcgac
gataaagacaaatacaatagcgaaagagaggctggctccatcaaggtctttggtttccct
aaagagtcatag

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