Apostichopus japonicus (Japanese sea cucumber): 139967684
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Entry
139967684 CDS
T10891
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139967684
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139967684
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139967684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
zf-C2H2_DHX34
DEAD
HA2_C
AAA_22
HA2_N
nSTAND3
AAA_7
ResIII
ATPase
Rad17
zf-C2H2_4
AAA_19
AAA_29
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
139967684
NCBI-ProteinID:
XP_071827785
LinkDB
All DBs
Position
5:12449946..12478718
Genome browser
AA seq
1260 aa
AA seq
DB search
MPSHKSSRTRHREKNDRDADRYRRESKHYKHENRERSSRGDNNYKRWDDYRTTDRHNEDS
KKKGWRYYGYTEKDLISAPKEDSSKQQSLHRDDEASTSKRLPTERKVLVEIERKPEEKAI
VKREVGAKNKEKLLPFMFDWKRHKHELDKLFFESKECLIKRGGQEYRDFWIFLEKYLKFQ
AREQQKDISVGQSDDKEDVDKTVFKLPKKYDKRYKINISLRYPPRELLDRYGDTDDEDEE
ALTTSKLREFRTIFLYYLDFCQKQQLSKLVKLKTDQANLPIFKYNDMIVNAVKKHNVVLI
AGDTGCGKSTQVPQYLMAAGFDKIACTQPRRIACISLAKRVGFETLNEYGDQVGYQIRFE
AMKSSATKIIFLTEGLLLRQIQSDPHLSQYNVIVLDEVHERHLQGDFLLGILRCLLEQRT
DLKLVLMSATINLELFSNYFEDAPVIKVPGRLYPIQLEYVSTKKGEIQIEKLDPRPYLRI
MQRIDHKYPADQRGDLLVFMSGMKEISTLVEAANVYASQTERWIVLPLHSSLSIAEQDKV
FDIAPEGVRKCIVSTNIAETSVTIDGVRFIIDSGKVKEMSYNAQAKMQQLQEFWISQASA
EQRKGRAGRTGPGVCFRLYDESDFDGFQDYSTPEIQRVPLDSLALQMLSLGMKNPRVFPF
IEPPPVASMETSLVFLREQGAVDANEKLTPVGTMLANLPVDVVIGKMLIMGTLFQMVEPV
LCIAAALSVQSPFTNKAYHDSDAITARKPLESDQGGPFTLLSAFNEWIQVKAERGAGSRK
WCKRRCLEEQRFYEMSKLKRQFRDLLKDHNMLGYGSQHNKGMYSVNERLERGRDRRKLSS
LKRNKQKNPRKRKVLKLDFSNTEMDGGEEEEEEEESESFDISHLEFKLSHNMDKLQAAAQ
LNKRFSLRELNVLKVILCSGLYPQLAIADDCNSYRKDSDQVYHTKAKPFVVLHPNSIFAN
NPALLEPPPPEDDNVSLGSKGPLSNKHSLLSYVSLLETNKPYLVNTMKVPALQTILLYAT
SIDTNMDCTRIIADDWLEFTFTDCEGSQSLVSAVLQLRNVWTRLLEMKLKETELRSGLES
PNLEIKHQERLLASKLAQFLDSDVKYTMKRTSQTELQTMYAGPLAVSDSKSSYFTSQSKN
ASPHPVKGGYQIKDYFIFGCLADASADYISVLRKHWTCPICNQSMVITTLEKLEHEASCS
EPEKTSSSQDQSDEAKSQGPKSLRRDYHCPICDEQFSFTTSEILKHRRDHQRTEESKVTS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgcctagtcataagtcatcaagaacaaggcacagagaaaagaacgacagagatgctgat
agatatcggagagaatcaaagcattacaaacatgagaacagggaaagaagttctagaggt
gataacaattacaaacgttgggatgactatagaactactgacaggcataacgaagatagc
aagaagaaaggttggcggtattatggttacactgaaaaggatttaatttctgctcctaag
gaggacagttccaaacaacagtctctgcatcgagatgatgaagcaagtaccagcaagaga
ttaccaactgagaggaaggtacttgttgagattgagagaaagccagaggagaaggccatt
gtaaagagggaggttggagctaagaacaaagagaaactccttccttttatgtttgattgg
aaacgacataaacatgagttggacaagctattctttgagagcaaagagtgtctaataaag
aggggaggccaggaatatcgtgacttttggatatttttggagaaatatttgaaatttcaa
gcccgggaacagcagaaagacatttcagtaggtcagtcagatgataaagaagatgttgat
aagacagtgtttaagttaccaaagaagtacgacaagagatataaaataaatatctcactg
aggtatccgccgagggaactcctagatcgttatggagacaccgatgatgaagatgaagaa
gcattaactacctccaagcttagagaattccgaacaatattcctctattatttggatttt
tgccagaaacaacagttaagtaaattggtgaagttgaagaccgaccaagccaacttaccg
atcttcaaatacaatgatatgattgtcaacgctgtgaagaagcataatgtggtgttaatt
gcaggcgacacaggatgtggaaagtcaacccaggtaccacaatatctgatggcggcaggt
tttgacaaaattgcctgcacccaacctcgtcgaatcgcctgcatctccttggccaagagg
gtcggctttgagacactgaatgaatatggagaccaagttggttatcagatcaggttcgag
gctatgaagagctcagccaccaaaatcattttcttgacagaaggtttgttactccgtcag
atccagtcagaccctcatctgagtcagtataacgtgatcgtcctcgatgaagtccacgag
agacatctccagggggacttcctcctcggcattctacgctgccttctggagcaaagaacc
gacttgaagctagtcttaatgtcagccaccattaatttagaattattctcaaattatttt
gaggatgctcctgtcatcaaggtacctggtcgtttgtatccaatccaattggaatatgtc
agcacaaaaaaaggggaaatccagatagagaagcttgacccccgaccttacctgcggata
atgcaacggattgatcacaagtatccagcggaccagcgaggggacctgttggtcttcatg
agtggtatgaaggagatatctaccctagtagaagctgctaatgtctacgccagtcagacg
gaaaggtggatcgttctccctcttcatagttcactgtccatagccgaacaggataaggtg
tttgatattgctccagaaggtgtcagaaaatgtatcgtgtccacaaacattgcagaaacg
tctgtgactatcgacggtgtcagatttattattgattcgggaaaagttaaagagatgagt
tacaatgcccaggctaagatgcaacagctacaggaattctggatcagtcaagctagtgca
gaacagaggaaaggaagagcaggacgtactggtccaggtgtctgtttccgtctctatgat
gaatcggactttgatggatttcaagactattctactcctgagattcaaagggttccactg
gattcattggcattacaaatgttatctctaggaatgaaaaatccaagagtcttcccgttc
attgagccgccacctgtagctagcatggagacgtctttggtatttttaagagagcaagga
gcagtggacgccaacgagaagctgactcccgtgggaacgatgttagctaacctaccagtg
gatgttgtgatagggaaaatgcttatcatgggaacactctttcagatggttgagcctgtg
ttatgtatagcagctgccctgagtgtccagtcacccttcactaacaaggcctatcatgac
tcagatgccatcactgcgaggaaacctcttgaatcagaccaaggaggtccatttactctc
ctcagtgccttcaatgagtggattcaggtaaaagccgaaagaggagcaggttctagaaaa
tggtgcaaacgtagatgcctggaagagcagagattctatgaaatgtctaaacttaagcga
caattcagagacttgctcaaggatcacaacatgttgggatatgggagtcaacacaacaag
ggaatgtattctgtaaatgagagactggaacgaggcagagacaggagaaagctcagctca
ctgaaacggaataaacaaaagaacccacggaagaggaaggtcttgaaactagactttagt
aatacagagatggacggaggagaagaggaggaggaggaagaggaaagcgaatcctttgat
ataagccatttagagtttaaattatctcataacatggataaactacaggcggcagcccaa
ctcaacaagagattttcacttcgagaactgaacgtattgaaagtcatcctatgtagtgga
ctctatccccaattggccatagcagacgactgtaattcatataggaaagattcagaccag
gtttatcacaccaaggccaagccatttgtggtcttacaccctaacagtatatttgctaat
aatcctgctctattggagccacctccaccagaagatgataatgtcagtcttggatcgaaa
ggaccactcagcaacaaacattcattactttcttatgtttcactacttgagacaaataaa
ccatacttggtcaacacaatgaaggttccagccttgcagacaatcctactctatgcaacc
agtattgataccaatatggactgcaccagaatcattgctgatgactggctggaatttact
ttcactgactgtgagggttcgcagtctttagtttcagctgtgctgcagctcaggaatgtt
tggaccaggctcctagaaatgaaactaaaagagacggagctgaggagcggactagaatct
ccaaaccttgagattaaacatcaagagagactactggccagtaaactagctcagttctta
gacagtgatgtcaaatataccatgaagagaacctcacaaacagaactacagacaatgtat
gcaggaccattagctgtttcagattcaaagagttcatactttacaagtcagagcaagaat
gcttctcctcatcctgtgaaaggaggctaccagataaaggactattttatatttggatgc
ttggcagatgcttctgccgattacatatcagtgttaaggaagcactggacatgtcctatc
tgcaaccagtccatggtcattactacacttgaaaaattggagcatgaagcaagctgttca
gagccagaaaagacttcttcatcacaagatcagtctgatgaagctaagtctcaaggccca
aaatctctgcgtagggattaccactgtccgatctgcgacgaacaattctcgttcacaacc
tctgaaatcctgaagcacaggagggaccaccaaagaacagaggagagtaaagtgacaagc
tga
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