Apostichopus japonicus (Japanese sea cucumber): 139968662
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Entry
139968662 CDS
T10891
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139968662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139968662
Enzymes [BR:
ajj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139968662
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
139968662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
139968662
NCBI-ProteinID:
XP_071829023
LinkDB
All DBs
Position
6:2539399..2576282
Genome browser
AA seq
1388 aa
AA seq
DB search
MVKDQFRETDLARTISHVCFGLMTSDEMRQQAHIHVVHKNLYQPDTRQPISYGVLDHHMG
TSEKGNPCLTCQKPLPECVGHYGFIDLALPVFHIGYFRSIINILQCICKTCGRVQLTTNE
AKVFLYSLKRPSLSYLQKKGLRKKIHEKCKKSQVCHYCGAYNGIVKKCGTLKIVHEKYKK
TRKVSDGSLEEFQAALGTAVTHNKELANLIKTASEIMNPLIVQDLFRRIPHEDIVLLGME
STNSRPQDLILTRLLVPPLCIRPSVISDLKSGTNEDDLTVKLSEIILLNDVIEKHRQGGA
KMSMIMEDWDFLQLQCALYINSETSGIPLSMQPKKFTRGFCQRLKGKQGRFRGNLSGKRV
DFSSRTVISPDPNLSIDEVAVPIHVAKILTYPEKVTKANISLMRKLIENGCDTHPGANFI
QQRSFNQKKYLKYGNRKKMALDIRYGDIVERHLLSGDVVLFNRQPSLHKLSIMAHKARVM
PHRTFRLNECVCGPYNADFDGDEMNLHLPQTEEAKAEALTLMGVKSNLVTPRNGEPLIAA
IQDFITGGYLLTQKDVFFGRSRACQIVASLIDQRGNVNQLDLPPPAIIKPTQLWTGKQLF
GLILKPNKKKEIKVNLRAKAKNYSHSEDLCINDSFVVVYNSQLMCGAMDKSTLGSGSKNN
VFYILLRDYGEQEAADAMSRLAKICPVFLSNRGFSIGIGDVTPGQGLLKAKMDLLSAGYN
KCDDYISDLNSGKLQTQPGCSEEQTLEAMILKELSVIRDHAGNACLRELHKSNSPLTMAV
CGSKGSFINISQMIACVGQQAISGQRIPNGFEDRALPHFKRHSKIPAAKGFVKNSFYSGL
TPSEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDGTVRNSVNDICQFEY
GADGLDPAEMEAKEGEMDFKRILKHITNKYSCPGTYALSGSKIIEVAEKEIDGKDFEVCS
KGFKKNLKTFIHELAEVIKKCRQRYGVPETQAQPNVIYQLERVTMIQLTEFLKMCKGKDI
RAQLEPGTTVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTP
IITAQLAVDDDADFARLVKARIEKTKLGEVSEFLEEVFLPDDCFILIKLDLDRIKLLKLE
VSAESICISICAAKLKVQPGDVKIHADNLITVHPQETAKSSMYYSLQFLKETLPDVTIKG
IPTVSRAVIHIDDQAGCSKYKLLVEGDNLRGVIATRGIKGTHTTSNNTYEMEKTLGIEAA
RRTIMEQIEYTMKSHGMSIDHRHMMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEK
TADHLFDAAYYGQKDAVCGVSECIIMGIPMNVGTGIFKLLHKADKESRPPQRKLIFDNPE
FHVPGVST
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagaccagttccgagagaccgacttggcgcgaacaataagccatgtctgtttt
ggtttaatgacatcagatgaaatgagacagcaagctcacattcatgtggtccataaaaat
ctttaccaaccagacacaaggcagccaatttcatatggtgttctggaccaccatatgggg
actagtgagaagggaaatccttgcctaacatgccaaaagcctttgccagagtgtgttggg
cattatggattcatcgacctagccttgccggttttccatattggttacttcagatccatc
atcaacatcctacaatgtatctgtaagacttgtggaagggtccaattaacaactaatgaa
gccaaagtattcctttacagcctgaagcgcccatctttatcttatctgcaaaagaaaggc
ttgaggaagaagattcatgaaaagtgtaaaaagtctcaagtttgccattattgtggagct
tacaatggcatcgtcaagaagtgtggtacccttaaaattgtccatgagaaatacaagaag
actcgtaaggtttcagacggcagcctggaggagtttcaagcggctctaggtacggccgtc
actcacaacaaggagctggctaatctcattaaaacagcttcggaaatcatgaatccattg
attgtacaggacttgttcaggagaattccacatgaggacattgttcttcttgggatggag
agcactaacagtcgacctcaagatctgatcctgacccgacttctggttcctcctctctgc
atcaggccttccgtcatatcagacttgaagtccggaactaatgaagacgatttgacggtg
aaattgtccgagattattcttttaaatgacgtcatagagaagcatcgacaaggtggagct
aagatgtccatgattatggaagactgggatttcttgcaactgcagtgcgccctctatatt
aattcagagacgtcaggcataccgttaagcatgcagccaaagaaatttacaagaggcttc
tgtcagaggttaaagggcaagcagggtcgtttccgtggtaacttgtccggaaagcgtgta
gacttttcaagtcgaacggtcatttctccagatcctaacttgagtattgatgaggttgct
gtaccaatccatgttgcaaaaatcttgacttatccagagaaggtcacaaaagccaacata
agtttgatgagaaagctgatagaaaatggctgtgatactcatccaggagcaaactttatt
cagcagaggagtttcaaccagaagaaatatttgaaatatggcaaccgcaagaaaatggct
cttgatataaggtatggggatatagtcgaacgccatcttttatctggagatgtggtccta
tttaatagacagccttctcttcataaacttagcatcatggcacacaaggctcgtgtaatg
ccccatcgtactttccgtctcaacgaatgtgtttgtggtccctacaacgctgattttgat
ggggacgagatgaacttgcatcttccacagactgaagaggctaaagcagaggctttgact
ttgatgggggtcaagtcaaacctggtgaccccaaggaatggagaacctctcattgcagct
atccaagatttcataacaggtggttacctcctcacccaaaaagatgtcttcttcggtcgg
tctcgagcatgtcagatcgtggctagtttgatagaccagagagggaatgtcaaccaatta
gatctacctccaccggcaatcatcaagccgactcaactgtggacaggaaaacagctcttt
ggtctcatcttgaaaccaaataaaaagaaagaaatcaaggttaacctgagagcgaaggcc
aagaattattctcattcagaagatctctgcataaatgactcatttgtcgttgtgtacaac
agtcagctgatgtgtggcgctatggataaaagcactttggggtctggttccaagaataac
gtcttctacatcctccttcgagattacggagaacaagaggcggcagatgccatgagcagg
ctggcaaagatttgtcccgtctttctaagcaacagagggttctccatcggaatcggtgat
gtcactcccggccaaggtctattgaaggccaagatggatctgctttcagctggttataat
aaatgcgatgattacatcagtgacctgaacagtggtaaactacaaactcaacctggatgt
tcagaagaacagactctggaggcgatgatcttaaaggagttatctgtgattcgtgaccac
gctggtaacgcttgtctccgagaactccataaaagcaacagccccctgacaatggctgtt
tgtggctctaaaggttccttcattaatatttctcagatgattgcatgtgtaggtcaacaa
gccatcagtggacagaggatcccaaacggttttgaagacagggcgctgcctcacttcaaa
cgacattctaaaattccagctgccaagggatttgtgaagaacagcttttactcaggattg
actccgtctgaatttttcttccatactatggctggaagagaaggtttggtcgacacagct
gtgaaaactgccgaaactggttacatgcagagaagattggtgaagtcgttggaggacctc
tgctgccattatgacggcaccgtacggaactctgtcaacgacatctgtcagtttgaatac
ggcgcagacggtttggacccggcagaaatggaagctaaagaaggagagatggactttaaa
cgaatcttgaagcacattacgaataaatattcgtgcccagggacgtacgccctcagtggt
tcaaagatcattgaagtagctgagaaggagattgacggtaaagactttgaagtttgcagc
aagggatttaagaagaacttaaaaacattcatccatgaacttgcagaggtgattaaaaaa
tgcagacagagatatggtgtacccgaaacccaagcacaaccgaatgttatctatcagctg
gaacgtgttaccatgattcaactaacagaattcctcaagatgtgtaaaggcaaggatatt
agagctcagcttgaacccgggaccacggtcggggctatcgcagcccagagcatcggtgag
cccgggacccagatgaccctgaagacatttcattttgctggagtggcatctatgaatatt
actttgggtgttcctcgtatcaaagagatcatcaacgccagtaagaacattagtaccccg
atcatcaccgcccagctagctgtggacgatgacgctgatttcgctagactggtgaaagcc
aggattgagaaaactaaattaggagaggtctccgagttcttggaggaggtgttcctccca
gatgactgcttcatcctcattaaactcgatttggatcggatcaaacttctcaagctcgag
gtatcggcagagagcatctgtatctccatctgtgcggcgaaactcaaagtacaaccgggg
gatgtaaagattcatgccgataacctgatcaccgttcatcctcaagagacagctaagagt
tcaatgtactactcgctacaattccttaaggaaactcttcccgatgtcactattaaggga
atcccgacagtatccagagcagtcattcacatcgacgaccaggccggttgctctaaatac
aaactgctcgtcgagggggataacttacgaggtgtgatcgctaccaggggcattaaaggc
acccatactacgtctaataatacgtacgagatggagaagacactggggatagaggcagca
agacggaccattatggagcagattgagtacaccatgaagagccacggaatgagtatagac
cacaggcatatgatgttactagctgaccttatgacctataagggagaggtgctaggtatc
actcggtttggcctcgctaaaatgaaagaaagcgtcctgatgttagcgtcttttgagaag
acagcggatcatctgtttgacgctgcttattacggtcagaaggatgctgtttgtggtgtg
agcgaatgcatcatcatgggaatcccaatgaatgttgggacaggaattttcaaactactt
cacaaagcagacaaagagagcagacccccacagaggaagttgatttttgataacccagag
tttcatgttcctggagtgtccacttga
DBGET
integrated database retrieval system
