Apostichopus japonicus (Japanese sea cucumber): 139968749
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Entry
139968749 CDS
T10891
Name
(RefSeq) DNA polymerase beta-like
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139968749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139968749
Enzymes [BR:
ajj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
139968749
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
139968749
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
139968749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
Cdd1
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
139968749
NCBI-ProteinID:
XP_071829199
LinkDB
All DBs
Position
6:4870450..4877041
Genome browser
AA seq
340 aa
AA seq
DB search
MSKRKAPQNENPNQEIVDFLVELANYEKNVTRALFKHNAYRKAASVIAKYPTKITTGDEA
KKLDGVGDKISKKIDEFLQTGKLQKLEKIRKDDTSESINLLTRVSGIGPAAARKLFDDGI
KSIEDLRKKQDKLNHHQKIGLKHFEDFEKRIPRSEMERLEAVIIDLVEEVDDSYTATICG
SYRRGAVSSGDIDILLTHPDFKAEDGKKPALLHAVVNKLVDFKFVTDTISLGDTKFMGVC
RLAKEADADEDDNPNLFRRIDIRLIPSDQYSCGTLYFTGSDMFNKHMRGIALENGFTLNE
YSIRPLGSTGVPGEPLPVSSEKDIFDIIGMKYKKPSERSM
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaggaaagcacctcaaaatgaaaacccaaaccaagagatagtggactttcta
gtcgaattagctaactatgagaagaatgttacaagggccctctttaaacataatgcatac
agaaaggccgcaagtgttattgctaaatatccaaccaagataacgacaggggatgaggca
aagaaactggatggagtaggagataagatttctaagaagattgatgagttcctccagaca
gggaaactgcaaaagctggagaaaatccgcaaggatgacacatcggaatccatcaatttg
ttgacaagggtttctggaattggacctgctgctgctagaaaactctttgatgatggaatt
aaaagtattgaagatttgagaaaaaaacaggacaaactcaaccaccatcaaaagattggt
ttgaaacattttgaagactttgagaaaaggattcccagatcagaaatggaaagacttgag
gcagttatcatagatctcgtggaggaagtggacgactcttacacagcgactatctgtgga
agctacagaagaggagccgtttcaagcggtgatatcgatattttactgacccatcctgac
ttcaaagcggaggatggcaagaaacctgcccttctacatgcagtggtcaacaaactggtg
gattttaaatttgtcacagataccatttctctaggtgataccaaatttatgggtgtctgc
cgcttggccaaagaagcagatgcggacgaagacgacaatccgaatctgtttcgaaggatc
gacatccgattgattccttccgatcagtactcctgtggtaccctatacttcacaggcagt
gacatgttcaacaagcatatgcgagggatcgctctggagaatggattcacactgaatgaa
tattcaatacgacctctaggtagcacaggtgtgcctggagagccactcccagtatccagt
gagaaagatatattcgatatcatcggaatgaagtacaaaaagccctcggagagaagcatg
tag
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