Apostichopus japonicus (Japanese sea cucumber): 139969026
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Entry
139969026 CDS
T10891
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139969026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139969026
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139969026
mRNA degradation factors
5'-3' decay
Decapping complex
139969026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
139969026
NCBI-ProteinID:
XP_071829830
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All DBs
Position
1:16769246..16801997
Genome browser
AA seq
840 aa
AA seq
DB search
MDDDYECGTSMPLDEGPEDVNVFKGKDYNDLNDETFGLEDEDFGDEAWELTHEKLAFNFD
QQMGRPEEDQGVTSKLMMEGDPSDTDKGPLEEDLEKSITQLVLDDEDDDEMFDIPTKSTS
SQPIKIQFADSNLTNLFGPGSPPSLYDPNLMSQSAKENIWGAAHVEKAKTKSAEDSLKAL
LHIGGGQGKTGGDSAWTDPSILQAVPGPGHMPAKVMTLEEIEQGVNHEATSNSAAQPQPI
GTPPRGQNISMGTPQRGMQNQMPGGVPEMVRYWTQKLHQIMGGRVSPTEISKLIVHMHQT
SGRISPDYLHQVLIKRASVRSPMVNSPNFAPGTRPNMMPRSPFMPMPYPNQGRVPTHPHQ
GSPMGRGHAMGISPMGRGYPGTPHPSFGLTPMHPRIPPVRPSTDPGPARRQWIRTPQRGR
PDGRYPRPGRDQCQPPGDEYANLMTQREKDWVIRIQMLQLQTENPMISDYYYQIMLQRRQ
TKLKEGDKGSDEKKSLGDEKFGRGDADERRGKRDGEDKKNKLEPRVYKPAQFEGALGRVT
SSSVNNPRQLIDVHSIRHEEEEDASKAKDHGKKRKILLSIERMYDVFLKADDVAIQLNGL
PESDTGALLEKRQQLLNDLYKSLQLEEEPTEDCSSHEVLLQILSVRKGRKLLARLLPLLS
HQQGSLIVDVVALHLLTVLKRESADIKKGASEGVPQEETLPILFQSMANIINCKTMAEVL
GLAKNMTENTPLPQQGLPNVTGAIQHKFGLSVILCALSRAEALFSSTTAKDLDPAIIQEW
AQCVDVFANAICEMPNTSIAEPLLKFPQSLEHFKHFVSKQSFTVLEGKLRPITEEEERPS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgactacgaatgtggtacttcaatgcctcttgatgaagggccggaggatgtc
aatgtattcaaaggcaaagattacaatgacttgaatgatgaaacatttggcttggaggat
gaagactttggagatgaagcatgggaactcactcatgagaagttggcattcaactttgac
caacagatgggtcggccagaagaggaccagggggttacctcaaagttgatgatggaagga
gatccttcggatacagataaaggaccattagaagaggatttggagaagagcattacccag
ttggttctagatgatgaagatgatgatgaaatgtttgatattccaacaaagagtacatct
tctcagccaatcaaaattcagtttgcagattccaacctgacaaatctctttggaccggga
tcacctccgagtctgtatgatcctaacctcatgtcccaaagtgccaaggagaacatatgg
ggtgcagctcatgttgaaaaggccaagacaaagtcagctgaggatagtctcaaggcgcta
ctacacattggaggagggcaaggcaaaacaggcggagatagtgcttggacggatccttcc
attcttcaagctgtccctggaccaggacacatgccagcaaaagtgatgaccttagaagaa
atagagcaaggagtgaatcacgaagctacatccaactctgcagcacaaccacaacccatt
ggtactccaccgcgagggcagaatatctcgatgggtaccccacaaagaggaatgcagaac
cagatgcctggtggtgtccctgagatggttcggtactggactcagaagctacaccagatc
atgggaggacgggtatcaccgacagaaatcagcaagttaatagttcacatgcaccagacg
agcggaagaatatctccagattatctacatcaggtgctcatcaaacgtgcctcagtgcga
tcaccgatggtaaattccccaaattttgctcctggcacaagaccgaatatgatgcctaga
tcaccattcatgcccatgccatatcccaaccaggggagagtaccaacacatcctcaccag
gggtctcctatgggcagaggtcacgcaatgggtattagtcccatgggaagaggctaccct
ggaacaccacatccaagctttggtttaacccctatgcatccaaggattccacccgttcgg
ccatcgacggaccctggtcctgcaaggaggcagtggattagaacaccacaacggggcaga
ccagatggcaggtatccacgaccgggaagagatcaatgccaaccaccgggggatgaatat
gcaaatttaatgacacagagagagaaggattgggtgatccgtatacagatgcttcaattg
caaacagagaacccgatgatctcagattattactatcagataatgttacagagaagacaa
actaagctgaaagaaggagacaagggatccgatgagaagaagtctttaggagacgagaaa
tttggcagaggagatgcggacgaaagacgtggaaagagagatggagaagataaaaagaat
aaactggaaccaagagtttacaaaccagctcaatttgaaggtgccttaggtcgggtaact
tcatccagcgtcaacaatcccagacaactgattgatgtccacagtatcagacatgaggaa
gaagaggatgcaagcaaggccaaggaccatggtaagaagaggaagattcttctgtccatt
gaacgaatgtatgatgttttcttgaaagctgacgatgtagcaattcaacttaacggcctc
ccagaatcagacactggtgccctcttggaaaaacgacagcagctgttgaatgacttgtat
aagtctttgcaactggaagaagaaccaacagaagattgcagcagccatgaagtgctatta
cagatcctatcggtcaggaaaggcaggaagttgctagcaagattactgcctctgctctca
catcaacagggaagtcttatcgtcgacgtggtagctcttcatctgctcacagtattgaaa
cgagagtcagcagatatcaagaaaggtgcctctgaaggagtccctcaagaagagacatta
ccaattctttttcaatcaatggctaacatcatcaattgtaagactatggctgaggtgctc
ggtttggccaagaacatgacagagaacactccactgccccaacaagggctaccaaatgtc
actggtgctattcaacacaaatttggactctctgttatcctgtgtgccctcagccgtgct
gaggcacttttctcaagtacaactgccaaagacttggacccagctattatacaagaatgg
gctcagtgtgtagatgtgttcgctaacgccatttgtgagatgccgaacacgagcattgca
gagcctcttctcaagtttccacaatctctggaacatttcaaacactttgttagcaagcaa
tcatttacagtgctagagggtaaattaagaccaataacagaagaagaagagagaccgagt
taa
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