Apostichopus japonicus (Japanese sea cucumber): 139969184
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Entry
139969184 CDS
T10891
Name
(RefSeq) ATP-dependent RNA helicase DDX50-like
KO
K13183
ATP-dependent RNA helicase DDX50 [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139969184
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139969184
Spliceosome [BR:
ajj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139969184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GUCT
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
139969184
NCBI-ProteinID:
XP_071830155
LinkDB
All DBs
Position
6:17672122..17695251
Genome browser
AA seq
821 aa
AA seq
DB search
MEEVKLSKEARRMKKKLAKKNSLTNGGVELPEVNGFHEETDALESGQVIKRKLDDAETPI
KRKKKRKSKEVAVIKETNGQELEPQITELLKEDKLAENGSVDSGTDSPKKKKDKKNKKVK
FGENETVDGVNGTNDEEPEKALQQNGKFDSSEESDDEIDLMKKTFSSRLDAKTKEAEQGK
KVTTIDPEKIKQEGAFENFELSAETIAQLKASGVNYLFQVQSKTFTDVFSGIDVIVKART
GTGKTLAFVLPLIEKLKHHNKKVGRAPAVLTLLPTRELAIQVFKCYQSMDPQLHCLCVYG
GVSYNQQTNALRRGVDIVVGTPGRIGDLVQRQALDLSQLQFVVLDEVDRMLDMGFAADVE
NLITPSYSRESQSNPQTLLFSATMPPWVLKIANKYLNNSYKTIDLVGKEGLQTATTVTHL
AIRCKPGLEPGLITDIFQRYAGKSGQGIVFCQTKNQVNSMLGDDNFGLHAMLLHGDIEQA
RRELTLNKFRQGLFKVLVTTDVASRGLDIPEVDLVLQCQPPNDVDSYIHRSGRTGRAGRP
GVSICLYMPGCEQELQNVERRAQLKFKQVPPPQPEELYTSKLENLENSFEKVPQQSKEML
ESRAQSLLDKYGPLETVTSLLAHVAGLQDMCRRSSLTCLPRKTTFKITSELSIGNRDELS
DILQRKLGDDAFKMQKNSVLLSKDRKTALFDTEFEIEKQVLDAFADDEQTQVETLDEFPD
NFFTDFYHGNSFGRSRGFGGGRGYGGRGRGRGGFRGGRGGFGRGGGFGRGGGRGRGGGGR
GGGRGRGGFRGGRGDGAGFKSGRGNFRGGFNRGGPKTGGGE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagtaaagctgagtaaagaagcaagaagaatgaagaagaagttggctaaaaag
aactctttgactaacgggggagttgaactgccagaagttaatggattccacgaagaaaca
gatgcattggaaagtggccaggttatcaagaggaaacttgatgatgctgaaacacccatc
aagagaaagaagaagagaaaaagtaaagaggttgctgtgattaaagaaaccaatggacaa
gaattggaacctcaaataaccgagttgctgaaggaagataaacttgccgaaaatgggtcg
gtggactctggtaccgacagtcctaagaagaaaaaagataagaaaaacaagaaagttaag
tttggagagaacgagactgtggatggagtcaacggaactaacgatgaggaaccagaaaaa
gctcttcaacagaatggaaagtttgacagcagcgaggaatctgatgacgaaattgacctg
atgaagaaaaccttcagtagtagactggatgcaaaaactaaggaagcagaacaggggaag
aaagtgacaactattgacccggagaagatcaaacaggagggtgcctttgaaaactttgaa
ttgtctgcagagactatcgcacaacttaaagcttctggagtcaattatctgtttcaagtc
caatccaaaacattcacagatgtcttcagtggcattgatgttattgtgaaagcaagaact
ggtaccggcaagacgctggcgtttgtgttacctcttattgagaaactgaaacatcacaac
aagaaagttgggagagccccagctgttttgacacttctaccaaccagggagttggcaatt
caggtgttcaaatgttaccagtcaatggatcctcaactccattgcctctgtgtatacggt
ggtgtcagctacaatcaacagacaaacgccctgcgaagaggagtcgacatagtcgtggga
accccgggccgtatcggcgatctcgtccaacggcaagctctcgacctgtcccagttgcag
tttgtggtgttggacgaagtagaccgcatgttggacatgggttttgctgctgatgtagag
aatttaattactccttcctactccagggaaagtcagtcaaatccgcagacgttactgttt
tcggcgacgatgcctccatgggtgttgaagatagctaacaaatacctgaacaatagttac
aaaacaatagatcttgttgggaaagaaggactgcaaactgcaacaactgtcacgcattta
gctatacgttgcaaacctggtctggaaccaggcctcatcactgacattttccaaaggtat
gctgggaaatccggccaaggtattgtattctgtcagaccaaaaaccaagtgaattccatg
ctgggagacgataattttgggctccatgccatgcttctacacggtgacatcgaacaggca
aggagggaattgacgcttaataaatttcgtcagggtctattcaaggtcttagtgaccaca
gatgtggcttcaaggggattagatataccagaagtggacttagttctgcagtgtcagcca
cccaatgatgtagacagttatattcacagatcagggaggacggggcgtgcgggcagacct
ggtgtaagtatatgtctctacatgccaggatgcgagcaggaactacagaacgttgaaaga
agagcacaacttaagtttaagcaagtacccccaccccagccagaagaactctacacaagc
aaacttgaaaacctggaaaattcctttgagaaagtcccgcagcagtccaaggagatgctc
gagagtagggcacagtctcttctggataaatatggcccattggaaacggtcacatctctt
cttgcccacgtagcaggcctgcaggatatgtgcagaaggtcaagcttgacttgtctaccg
agaaaaactaccttcaaaataacgagtgaactctccattggtaaccgtgacgagctatct
gacatcctccaacgaaagctcggagatgacgcttttaagatgcagaagaattcggtcctg
ctcagtaaagaccggaagaccgccctctttgatactgaatttgagatagaaaagcaagtt
ctggatgcttttgccgatgacgaacagactcaggtggagactttggacgaatttccggat
aatttcttcacagacttctatcatggtaactcgtttggaaggagtcgaggattcggaggc
ggcagaggatatggcgggagaggcagagggagaggtggtttccgtggtggtagaggaggg
tttggtaggggaggtggatttggtaggggaggtggcagaggaagaggaggagggggtcgt
ggtggtggcagaggcagagggggtttcagaggaggcaggggtgatggagcgggatttaaa
tctggaagaggaaacttccgaggtgggttcaacaggggaggccccaagactggtggtggt
gagtaa
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