Apostichopus japonicus (Japanese sea cucumber): 139970615
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Entry
139970615 CDS
T10891
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139970615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139970615
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139970615
U7-dependent histone pre-mRNA processing factors
139970615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
139970615
NCBI-ProteinID:
XP_071832554
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Position
8:complement(5105750..5120578)
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AA seq
755 aa
AA seq
DB search
MTSIIKVTPLSGVHDEKPPCYMLQVDEFRFLLDCGWTEDFSMDAIDNIKSHIHQIDAVLL
SHPDHLHLGALPYLVGQCGLECSIYATIPVYKMGQMFMYDLFQSRHNSEEFSIFTLDDVD
AAFDKIIQVKYSQSLNLKGKGHGLTITALPAGHMVGGTIWKIVKDEEEIVYAIDYNHKKE
RHLNGCVLESISRPSLLITDAINAQYVQAKRRLRDEQLMNIILNTMRKDGNVLIAVDTAG
RVVELSLLLDQLWRNQDSGLHAYNLALLNNVSFNVVEFAKSQVEWMSDKVMKAFEDKRNN
PFHFKHLKLCHSLKELSKVPEPKTVLASVPDLECGYSRQLFIQWCHNPKNSVVLTSRTSP
GTLARTLIDQEDYKSFKLRVSKRVKLEGKELDEYRVTEKEKEKERKAAEAKRRLESESSE
SSEDEMEVDEAGRLKPQHDIMVGAELNKKGTNFFKHARKTYAMYPFHEKRIQWDEYGEII
NPEDFKMVETNIAEEDAGKQEEQADDADDIGEEEVDVPTKCTASEVAIDLKCSLTYIDFE
GRSDGESIKKLVLQVKPRQLVIVRGSPAATQTLAEYYRLQLSGSKVFTPGVNEVIDATLE
SHIYQVKLKDSLVSSLDFQKAKDIELTWIDGQLDLETGGRSLMLEEEEETEMETTAPGLE
MKKKKADDRIATLDAVSVSEETGHSQVFVNAPRFQDVKQVMTRNGILAEFTGGVLVCNST
VAVRRHESGRLCLEGTLCDDYFKVRDLLYEQYAVI
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgacatccatcattaaagtgacaccattatctggtgtacacgacgagaaaccaccatgt
tatatgctccaggttgatgaattcagatttcttctggattgcggttggacagaagatttt
agcatggatgcaattgataacattaaaagccacattcaccagattgatgcggtgttgctc
tcccatccagaccatctccatctcggtgccctcccctacctcgtcggtcagtgcggatta
gaatgttccatctatgctacaattccagtctacaagatgggtcagatgtttatgtacgat
ctcttccaatcgagacacaacagcgaagaattttcgatattcaccttggatgacgtggat
gcagcgtttgataaaatcatacaggtcaaatactcacagagtttgaacttgaaaggtaaa
ggtcacggcttgaccatcactgccctgccagcaggtcacatggttggaggaacaatttgg
aaaatagtgaaagatgaagaagaaatagtctatgcaatcgattacaatcataaaaaggag
aggcacttgaatggttgcgtactggaatccatcagcagaccctccctcctaatcacagac
gccatcaatgcacagtacgtacaagctaagaggcgactgagagacgaacaactgatgaat
attatcctcaataccatgaggaaagatggcaacgtattgattgcagtagacactgctgga
agagtggtagagctgtccctcctcttggaccagctttggaggaatcaagactcggggctt
cacgcctacaatttagcactgctaaataatgtcagctttaatgtggtagaatttgccaaa
tcccaagtcgagtggatgagtgataaagtgatgaaagcatttgaagataaaaggaacaac
cctttccacttcaagcacctcaaactctgtcattctctcaaagagctgagcaaagttcca
gaacctaagactgttcttgccagtgtacctgatttagagtgtggctattccagacagtta
ttcatccagtggtgccacaatccaaaaaacagtgttgtactcacgagtcggacatcaccc
ggaacactcgccagaacactgattgatcaagaagattacaagtcattcaaactcagggtc
agtaaaagggtgaagctagagggcaaagagctggacgaatacagagttacggagaaggaa
aaggagaaggagagaaaagcggccgaggctaagaggaggttggagagtgaatcgagtgaa
tccagtgaggatgagatggaggtggacgaagcaggaagattgaaaccacagcatgacatc
atggtcggtgctgagttgaacaagaaaggtacaaatttcttcaagcatgctaggaagacc
tatgccatgtacccgtttcacgagaaacgtatccaatgggacgagtacggagagataatc
aacccggaagatttcaaaatggtggaaacaaacatagcagaagaggatgctgggaagcaa
gaggaacaggctgacgatgccgatgatattggcgaagaagaagttgatgtgcctacaaag
tgtactgcatctgaggttgcaattgacttgaagtgttctttgacttacatcgactttgag
ggaagatctgatggtgaatccatcaagaaactcgtacttcaagtcaaaccaagacagttg
gtcattgtccgaggctctccggctgccacccaaacgttagccgagtattatagattacag
ctgtcggggagtaaagtattcacaccaggggtcaatgaggtcatcgatgctaccctggag
agccatatttatcaggtaaagctcaaagattccttggtcagctccttggatttccagaaa
gctaaagatattgagctgacctggatagacggtcagcttgacctggaaaccggaggcagg
tcactcatgctggaggaagaggaggagacggagatggaaaccactgctccaggccttgaa
atgaagaagaaaaaagcagacgacaggattgctactctggatgctgtgtctgttagtgag
gagactggtcattctcaagtctttgtcaatgctccgaggtttcaagatgttaagcaggtg
atgactaggaatggtatccttgcagagttcacaggtggtgtcctggtgtgtaacagtact
gtagcagtcagacgtcacgagtctggaagactttgtttggaagggactctttgcgacgac
tacttcaaggttcgggatcttctgtacgaacagtatgctgtgatctga
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