Apostichopus japonicus (Japanese sea cucumber): 139970750
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Entry
139970750 CDS
T10891
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ajj03009
]
139970750
Ribosome biogenesis [BR:
ajj03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
139970750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
139970750
NCBI-ProteinID:
XP_071832811
LinkDB
All DBs
Position
1:20229149..20366704
Genome browser
AA seq
2787 aa
AA seq
DB search
MDSKSSYHKTENRYKFESFTERISSINVDVIRRGTRATDQLNEDGDSYFVAGLAKWSDFN
CTQDFVNFTREVSFNIRNFAQLVHHEADCLSLLKKHLKIRSSLAYLPLLDLVVQIARDLQ
KDMYPHFREFFLIIVDLLDTQDTELIEAAFQTLGYLFKFLWRYLVKDIEDVYSFYSVLLT
SDRKEHIQRFAAESFAFLLRKVKTQDEFFEFLSKDLTKNPDHAAGVGRLFFEMMKSVRKQ
LHSCTPSVLTILLSKLRPRDEDDRGDTIQIDCEVVHQCLLATFQLICRYVNEESALLVWQ
CLLDLANSLRNEIAQDSKRSVSEEACQHLSYVLQLMEKVVRFGQGKLVTNPKQLVQILED
LLVGNFISEIYSQNILDLLSTLLSAKRCSIGMEQTSSLASYVFKANFQKSQLLHFCRTVA
EMNDFEGILLPKLLEYVHEQVTIAGTDRENSELILFTLVELIVMKSPVSGDCLATTSDPY
ILDFSILVERMKVSSRKKRRQSGNAVMTSFPEFLLDAVNNYLQGEGSIHYIWAVVLCLFN
VRPLNKERSGDLLVKLIDHLGDALRETTEEKEMDVLQYVLSCTVQAFLCCSQPKEIKDLE
ETVLTFMRLYPTSEHILTAAESWYSTATSCAVTVDAKKLAEQYLTLQENLTSSSSKVRLL
TLRILSYIPVTLPELPDAPRGQISVLQICQNAEEVPLTLDTYREKLMHLRKLEFEAVKPS
LPDDFDCSEVALRYLMGMLHVNLQLLWEPVIDLIKSHAYGMDKNKFWSIYRSLLLQASSE
LKTLKPHIPHRNRRKSLVTVETAKPQNLADLLQDSLKARMSTTDRPDPINFRNLLWKAMA
TFPDRVEKKTRDLVPMLLDFVKNEYNMMETFLAPSQDISKKTEDKNLDETEDDADEEGEE
EEEKGQGTYSKAKLQKSLVILLQLFSKFRNPKAFFQENKMRELFFRLLSSSNASVQKVTL
DCVMTYKFKYLQPYVEQFSALMEDKSFTDALLLFNIDEESGLIEDHHRDGLLPVLFRILY
GKMLSRAGAGPQGKSGVSFRRSLILRFLGGSKEAEMKIFLDLIFEPFMSMLDEDCSSMLK
KSLEALDISSVIPLRRQYSILETCGILFSRVGHLIGSYNSTILHILISMAANYNSLLEKR
DELQPHAIKQLKNLRQSAVNRLEQFSEVYDEYPYTSDEIDSLFEGVVWPQLDRLQNEGLA
GPTPLLKLFHQWSKQPRLHILLAKHHPTQADLYPIPGCIALLSSSLAAPTVVAMVMEVIY
NLLNLEESDPSEDDDVAPLPVNDVIPMSEVKVPSEEVVASFGIRLIHPFVSPILQYLKTA
VKPRKTRFELPLKEINLLSKLSLFVEDPVQSSNLISLLLPYLEKTKDKHENIEVDILNTV
KNLVIYVDDASQFINKLSKCFQRLSFRTSRKVLCDVISAMATRLPEMAESAKFVQDLNSW
DKKRLDEPDYSKRISTFNLANRKVEQMKDVDTTFLQLMLDNAFYFVVKMDEMSMRDNSSF
FLINFIQHSASLESGRGAIENLIHSKYLPSLKEGVKSRRESTRHECIAILSGVIKHYPHL
DVFDKMTVLHDKDKERDFYENIRHIQIHRRVRALRKLAKHCRQSELDVKGVRNFLLPLVT
GVIFDPVLVAKNENVVLEAIDCIGAIAGMMPWGTYFILFKQFLRLLLRSVDQQKIAVRLL
VAVLEAFHFDLTTSEYLPREQPGFLSEVDLDGNGEVKKDGVEDDKSKTEESLEEQDEPEK
DEEEMEDEESKVTENVKDQATRIHKTILNSVLPKLMEIFSERTKRDEQHKVTRDNGMDEN
EILRIPLTVAMVKLIKELPHNAVNTHLPSIVLKVCNILKHRIMNIRDIARDCLIKILHSA
GVDYFDGILHQMNNTLTRGYQVHVLGYSVHALIKSIPNLKSGDLDKSLPILIKILNGELF
GDLSEEKEVAAIISKVPEAKGTRSYDCYEIIGKVIGEGALTMLILPLKELLDTTHSHKVV
NKVREVLRRFSIGLVANSALSVESLMIFIHGLASDTLHLVTSFEKAKAALRPPPDPRLQP
PSVYLLPAKPKRWGESAHMGRKTNMHVLMEFGLLLLHNALKSSKLSPSKELHLRMLDPFV
DILTKALGAKTNVVVSVSVRCLTNMLRFPLPSLETTSEEITKSLFHLLKKHAGAGVTKGE
NLELITNTFKAVTVLVRDVKHHKINEKQLQVLLAYAEEDINDYTRQATAFTLLKAILFKK
LVVPEIHEVVRKIRQLAITSETPSIRAQCRQVDLQYLLDYPLGRKIKTPLEFYVSQLSYQ
VESGRRSALDMLMTMFNTFPQPLLLKYAGLFFIPLSIRLVNDESTSCRRLAASTLKTLLK
KLDNVKCEELFEMVKQWLTDDDAGHQRLAVQLCGVFVEAEGADSHKRLGFILPALEEKIR
SENWNQETPSQDPDDEKESDHLLFHLFSCLLKVLKTCHIIKSDEYQELLNAIWRSAEEHL
LHPHTWIRIVTAQLYGELFATWPYEKLISVFGDGDDSLHSSKDTGPYILSDGRSKVKVLT
TKFCGQLLSSQLKKDHANQILKNLVYLGKVMHKVYPMDKTESLSVDDVIQGDDLDKRLGE
DKSDHEEAEDEDEDSDDDDDTSQTAETNSNHDNNSKEDSKDTQRSISIAWMVRKLCWICS
NEAFRSHQETFRRSAIVKWFAALALDMDPADVKRCLPPIIRVLLRSIDDHNKHNDDNLKV
LCQEVLELLKGVVELEFFTRTYADVQRSRQEKRLQRKRQNALEAVANPEEAAKKKMKKNL
KKKESKKRKIKKMRPTYALTKKMKFTT
NT seq
8364 nt
NT seq
+upstream
nt +downstream
nt
atggattccaaatcatcatatcataaaacggaaaacagatataagtttgaaagtttcact
gagcggatttcaagtatcaacgttgatgtcattcggcggggtacacgagccaccgatcag
ctgaatgaggatggagattcatattttgtagcagggttagcaaaatggtctgacttcaat
tgcactcaagactttgtcaactttacacgggaggtttcattcaacattcggaacttcgca
caacttgttcaccatgaggctgattgtttgtcgctgttgaagaagcatttgaagatcaga
tcaagcttagcatacctaccgctgttagatttggtggttcaaattgcccgagatctccaa
aaggacatgtaccctcacttccgagagttttttctcatcattgttgacctgttggacaca
caagacactgaactaattgaggctgcttttcagacactgggctacctcttcaagtttcta
tggcgatacttggtgaaagatatcgaggacgtttacagtttttactcagtattgctcacc
agtgacaggaaggaacacatccagcggtttgcagcagaaagctttgcattcctgctgagg
aaagtgaaaacccaagatgagttcttcgagttcctttcaaaagatcttacaaagaatcca
gatcatgcagcaggcgttggaaggcttttctttgagatgatgaagagtgtaagaaaacag
ctgcattcatgcacaccttctgttttgactatcctcttatccaaattgagaccaagagat
gaagatgacagaggtgacacgatacagatagactgtgaagttgttcatcagtgtctccta
gcaaccttccagttaatatgcagatatgtaaatgaggagtctgctctgttggtttggcag
tgtctactggatctggcaaattctcttcgaaacgaaattgctcaggacagcaagagaagt
gttagtgaggaggcatgtcagcatttgtcctatgtcctacaactaatggagaaggtggtg
aggttcggtcagggtaaactggtcacaaatccaaaacagctagtacagattttggaggac
cttctcgttggaaacttcatctcggagatttacagccagaatatcctcgatcttctgtct
acgttgctctcagctaaacgctgctctataggcatggagcaaacttcgtctctagccagt
tatgtgtttaaggcaaattttcagaaaagccagctgttacatttctgcaggactgttgct
gaaatgaacgactttgaagggatattacttccaaagttactggaatacgtccacgagcaa
gtcacaatcgcaggaacagatcgggagaacagcgagttgattctcttcactttggtggaa
ctcatcgtaatgaaatctcctgtcagtggtgactgcttggcaacgacctctgacccttac
atcttagatttcagtatactggtggagaggatgaaggtttcgtccagaaagaagaggaga
cagtcaggaaatgcggtcatgactagttttccggagtttttgttggatgctgtcaacaac
tatctgcaaggagagggcagtatccattacatctgggctgtagtactgtgcctctttaat
gtcagaccacttaataaagaaagatccggcgaccttttggtgaagttgatcgaccactta
ggagatgctctcagagagactactgaagagaaagagatggatgtacttcagtatgttctg
tcttgcactgttcaagcattcctgtgttgcagtcaacctaaggagattaaagaccttgag
gaaactgtcttaacgttcatgaggttatatcccacatctgaacacatactcacagcggct
gaatcctggtattcaacggcaacatcttgcgctgttacagtggacgccaagaaacttgca
gagcaatatcttaccttgcaagaaaatttgacttcttcaagttcgaaggtgagactgctg
accctgaggattctctcatacatccctgtaacgttacctgagcttccagatgcgccgaga
ggccagatttcagtgcttcagatatgccagaatgcagaggaggttcccctgacccttgac
acttacagggagaagttgatgcaccttagaaaactagaatttgaagctgtgaagccaagc
ttgccagatgactttgattgctctgaagttgcactgagatacttgatgggtatgcttcat
gtcaacttgcagttgctatgggaaccagtcatcgaccttatcaagtcccatgcctatgga
atggataagaacaagttctggtcgatttatcggtctttgctgctgcaagcatcttccgag
ctaaaaacactcaagccgcatatacctcatagaaaccgcaggaaatctctggtcaccgtg
gaaacagccaaaccccagaatttagcagatttgttgcaagactcattgaaagccagaatg
tcgacgacggacagaccagatccgatcaacttcagaaatcttctatggaaggccatggca
acgtttccagacagagttgaaaagaagaccagagatctagtaccaatgctcctcgacttt
gtaaagaatgaatacaacatgatggagacattcttggctccatctcaggatatctctaag
aagacagaagataagaacttggatgaaacagaggatgacgctgatgaagaaggagaagaa
gaggaagaaaaaggccaaggaacttactccaaagcaaagttacaaaagtctctggtgata
cttctgcagctgtttagtaaattcaggaaccccaaagcattcttccaggagaacaaaatg
agggaattattctttcgtctcctgtccagctcgaatgcctcggtgcagaaggtcaccctg
gactgtgtgatgacctacaaattcaaatatcttcagccttacgtggagcagttctctgcc
ctgatggaagacaagtccttcacggacgctctcctgctcttcaacatcgacgaagaatcg
ggcttgatcgaggaccaccatcgcgacggactcctgcctgttctcttcagaatactttac
ggtaaaatgctgagtcgtgccggagcaggtccccagggtaagagcggagtcagtttccgg
agatccttgattctgagattcctaggtggatcgaaagaggctgaaatgaagatatttcta
gatctcatctttgaaccatttatgagtatgctggacgaggactgctccagcatgttgaag
aagtctctggaggccttggacatttctagtgtcattccactccgcagacaatacagcatc
ttggagacgtgtgggatactgttcagtagagtgggacatctgattggttcttataattca
accattctgcatatattaatttccatggcagcaaactataacagtcttttggaaaagaga
gatgagttacaacctcatgccataaagcagttgaagaacctgcgacagagtgcggtcaat
cggctggaacagttctcagaggtatacgatgagtacccgtacacctccgatgagattgac
agtctgtttgaaggtgtggtctggccgcagctggacaggcttcagaatgagggactggct
ggtcctacaccgttattgaaactattccatcagtggagcaagcagcccaggctgcacatt
ctactcgcaaagcatcacccgactcaagcagacctgtatcctatcccaggatgcattgca
ctgctatcctccagtctcgctgctccaacggtggttgccatggtgatggaggtgatctac
aacttgctcaatttggaagagtctgacccgagtgaagatgatgatgtcgccccccttcct
gtgaatgatgtcatacctatgtcagaggtcaaagtacccagtgaagaagttgtggcatcg
tttggaatccgtctaattcatccatttgtatctcctatcctacaatacctaaaaactgct
gtgaagccaaggaaaacaagatttgaacttcctctgaaggagattaatctgctttcaaag
ttatcattatttgttgaggatccagttcaaagctccaaccttatttctcttcttctacca
tacctggagaaaaccaaagacaagcatgagaacattgaggtggatattctcaatacagtg
aagaaccttgtgatctatgtagatgatgcatctcaatttatcaacaagctgtcaaagtgc
ttccagcgactctcgtttagaacttctcgcaaagttctctgtgatgtcatcagcgccatg
gcaaccagactgccagagatggccgagtcagccaagttcgttcaggatttgaactcctgg
gacaagaaacgcctggacgagccggattattcgaaacggattagtacatttaatctggcc
aatcggaaggttgaacagatgaaggatgtggacacaacctttttgcagttgatgttggac
aacgccttctactttgttgtgaagatggatgaaatgtcgatgcgagataacagcagcttc
ttcctcattaacttcatccaacattctgcctctctcgagtctggcagaggagccatcgaa
aacctgatccacagtaaataccttccgtctctcaaggagggagtcaaatctcggagagag
agcacccgtcacgaatgcatagcgattctgtccggagtcatcaaacattatcctcacctc
gatgtattcgacaagatgaccgtcctccacgacaaagacaaagagcgggatttctatgaa
aacatccgccacattcagatccatcgaagggtgagagcactccgtaagctcgccaagcac
tgcaggcagtcagaactggacgttaaaggagttcggaattttctgttgccattggtaaca
ggggtgatctttgaccccgtcttggtggccaagaatgagaatgtggtcctggaagccata
gactgtatcggtgccatcgctgggatgatgccgtggggcacgtattttattttattcaag
cagtttctgaggttgcttctgaggagcgttgaccaacagaagattgctgtgagacttcta
gtggcagtcttggaagcatttcattttgatcttaccacttccgagtacctcccacgagaa
cagccaggattcttgtcggaagtcgatttagacggaaatggagaggtcaagaaagatggc
gtagaggatgacaaaagtaagacagaggaaagtttggaggagcaagacgaaccggagaag
gacgaggaggagatggaagatgaggagtcaaaggtcaccgaaaatgttaaagatcaagcc
accaggattcacaagaccatcctaaacagcgtcttaccgaagctgatggaaatattctct
gagaggacgaagagggacgaacagcacaaagtaacccgtgacaacggaatggacgaaaat
gagattctgaggataccgttgaccgttgccatggtgaaactcatcaaggagttacctcac
aatgcagtaaacactcacctaccaagtattgtcctgaaagtctgtaacattctcaagcat
aggatcatgaatatcagagacatcgctcgagattgcctcatcaagatccttcacagtgca
ggagtggattatttcgatggtatcctacaccagatgaacaatacactcaccagagggtat
caggttcatgttcttggctattctgttcatgctctgatcaaaagcatcccgaatctgaaa
tcaggtgatctggataaatcattgccaattctcataaagatactgaacggagaattattt
ggagatttatcggaagagaaggaagtagctgccatcatcagcaaagtgccggaagcgaag
ggaaccagatcgtacgactgctacgaaattatcggaaaggttatcggcgaaggtgccttg
acaatgctaatccttcctttaaaggagcttctagataccactcatagtcacaaagttgtg
aacaaggttcgagaggtgctgcgaaggttttccattggactggttgccaatagcgccctc
agtgttgagtcattgatgatattcattcacgggctggcaagcgataccttgcatctggta
acctcgtttgaaaaagctaaagcagccctgcggccaccaccagatccaaggctacagcct
cctagtgtctacctacttccagccaagcctaagagatggggagagtcagctcatatgggc
agaaagaccaacatgcatgtactcatggaatttggccttttgctcctacacaacgctttg
aaaagctcaaagttatcaccgagcaaagagctccatctgaggatgttggacccatttgta
gatatccttaccaaagctctgggagccaagaccaatgtggtcgtcagtgtatctgttcgg
tgtttgaccaacatgctcagattccctctgccatcattggagacgacatcggaagaaatc
acaaagtcactcttccatctcctaaagaaacatgcaggagcaggtgtgaccaaaggagag
aacttggaacttattactaatacatttaaggcagtgacggtgcttgtcagagatgtaaag
caccacaagatcaacgagaaacagcttcaagtcctcctggcctatgccgaggaggatatt
aatgactacaccaggcaggccacagcattcaccctgctaaaggccattctgtttaagaag
ctagtggtccccgaaatacatgaagtggtacgtaagattcgccaactggccattacctca
gagacaccgtccatcagggcccagtgcagacaggtggacctccaatacctcttagattac
cccctcgggaggaaaatcaaaacccccctagagttttatgtcagccagctaagctaccag
gtggaatctggaagacgctcagctctggatatgttaatgaccatgttcaacacattccct
cagcctcttctcttgaagtacgctggattgttcttcattccgttgtcaatacgtctggtt
aacgatgaatctacttcctgcagaagattggctgcttcaacgcttaaaacactcctgaag
aagcttgataacgtcaaatgtgaggagttatttgagatggtgaagcaatggttgacagac
gatgatgctggacaccagagactcgctgtgcagctctgtggagtatttgtggaagcggaa
ggtgccgattctcacaagcggctgggattcatactaccagctttggaagaaaagattaga
tcagaaaattggaaccaggagactccatctcaggacccagatgatgagaaggaatcggac
catcttctctttcacttgttctcctgtttgcttaaagtcctcaaaacctgtcacatcatc
aaatctgatgaatatcaggaattgttgaatgcaatttggaggtcagctgaggagcatctc
cttcacccacacacgtggataagaatagtaactgcacaactgtacggagaactctttgcc
acctggccctatgagaaacttatcagtgtctttggagatggcgatgacagtttgcactca
agtaaagacacaggaccttacattttgagtgatggcaggtcaaaggtcaaagtcttgacc
accaaattttgtggtcagctcttgtcgagtcaactaaagaaagatcatgctaatcagata
ctcaagaatctagtataccttggaaaggttatgcacaaagtttatcccatggataagaca
gagagcttgtcagttgatgatgtcatacaaggagatgatcttgacaagaggcttggagag
gataaatctgatcacgaagaagcagaagatgaagatgaggattcagacgacgatgatgac
acttctcagaccgcagagacgaacagtaaccatgacaacaactccaaagaagattctaag
gatacccagagatctatttccatagcatggatggttcgtaagctgtgctggatctgttca
aacgaagcgttcaggtcgcatcaggaaaccttccgaaggagtgccatcgtaaagtggttt
gcggctctggccctggacatggatcccgccgatgtcaagagatgtctccctccaataatc
cgagttcttcttcggagcatcgacgaccataataaacacaacgatgataacttgaaagtt
ctctgccaagaagtgttggaattacttaaaggtgtggtggagctggaattcttcactcga
acctacgctgacgtccagaggagcagacaagagaagaggttgcagaggaagaggcagaat
gctctcgaggccgtcgcaaatcctgaagaagcagccaagaagaaaatgaaaaagaacctc
aagaaaaaagaatcgaagaagaggaagattaagaagatgaggccgacgtacgcgttgaca
aagaaaatgaagtttacgacttga
DBGET
integrated database retrieval system
