Apostichopus japonicus (Japanese sea cucumber): 139971260
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Entry
139971260 CDS
T10891
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03013
Nucleocytoplasmic transport
ajj03015
mRNA surveillance pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139971260
09122 Translation
03013 Nucleocytoplasmic transport
139971260
03015 mRNA surveillance pathway
139971260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139971260
03041 Spliceosome [BR:
ajj03041
]
139971260
03009 Ribosome biogenesis [BR:
ajj03009
]
139971260
03012 Translation factors [BR:
ajj03012
]
139971260
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139971260
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139971260
mRNA cycle factors
Stress granule specific factors
139971260
Spliceosome [BR:
ajj03041
]
Complex C
Other components
EJC/TREX
139971260
Ribosome biogenesis [BR:
ajj03009
]
Eukaryotic type
90S particles
Helicases
139971260
Translation factors [BR:
ajj03012
]
Eukaryotic type
Initiation factors
eIF-4
139971260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
AAA_30
Utp25_C
TniB
UvrD-helicase
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
139971260
NCBI-ProteinID:
XP_071833675
LinkDB
All DBs
Position
8:25260120..25271442
Genome browser
AA seq
396 aa
AA seq
DB search
MARKVLTNEAVEFETSEGVEVIPTFDSLGLRDDLIRGVYAYGFEKPSAIQQRAIKPVLKG
RDVIAQAQSGTGKTATFSMAVLQCLEVQMRETQALIMSPTRELAVQIQKVILALGDYMSV
QCHACIGGTSIGEDIRKLDYGQHIVSGTPGRVFDMIRRRHLRTRSIKMLILDEADEMLNK
GFKEQIYDVYRYLPPATQVCLFSATLPHDVLEMTHKFMTDPVRILVKRDELTLEGIKQFF
VAVEREEWKFDTLCDLYDTLTISQAVIFCNTKRKVDWLTEKMREANFTVSSMHGGMTQKE
RDEIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKG
VAINFVKSDDIRILRDIEQYYSTQVDEMPMNIIDLI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaaggtgctcactaacgaagcagttgaatttgagaccagcgaaggggttgaa
gtgatccccacgtttgattcgcttggactgcgtgatgatctaattcgtggtgtatacgct
tacggttttgaaaaaccttcagctattcaacagagagcaattaagccagttctcaaagga
agagatgtaattgcacaagcacagtctggtactggtaagacagccacgttctctatggca
gtccttcaatgtctggaagtccagatgagagagactcaagctctaattatgtctcccaca
agagagttagcagtccaaatacagaaggtgatcctagccttaggtgattacatgagtgtt
cagtgccatgcgtgcattggtggaacaagtatcggagaagatatcagaaaattagattac
ggacaacacattgtttctggaactccaggcagagtttttgatatgatccgaaggagacat
ctgaggaccagatccatcaagatgttgatcctggatgaggcagacgaaatgttaaacaaa
ggttttaaggagcagatctatgatgtataccggtaccttcctccagctactcaggtgtgt
ctgttcagtgccaccctccctcacgatgtgcttgaaatgacgcataagttcatgacagat
ccagtccgcatcctggtcaaacgtgatgagttgacgttggagggaatcaagcagttcttt
gtcgcagttgaacgggaagagtggaaatttgacaccctgtgtgacctttacgacacactc
acaatcagccaggctgttatattctgcaacaccaagagaaaggtggactggctgacagag
aagatgagagaggctaatttcacagtatcttctatgcacggaggaatgacgcagaaggag
agggatgaaattatgaaagaattcagatcaggaacaagtcgagtgttgataaccacagat
gtgtgggcaagaggcatagacgtacaacaggtttccctggtcataaactacgacctgccc
aacaaccgtgaattatacatccacagaataggccgttcaggacggtacggtcgtaagggt
gtggccatcaactttgtgaagagtgacgacatccgtattctccgtgacattgaacagtac
tacagtacacaagtggatgaaatgccaatgaacatcattgacttgatctga
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