Apostichopus japonicus (Japanese sea cucumber): 139971498
Help
Entry
139971498 CDS
T10891
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03008
Ribosome biogenesis in eukaryotes
ajj03013
Nucleocytoplasmic transport
ajj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139971498
03015 mRNA surveillance pathway
139971498
03008 Ribosome biogenesis in eukaryotes
139971498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139971498
03009 Ribosome biogenesis [BR:
ajj03009
]
139971498
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139971498
mRNA cycle factors
Stress granule specific factors
139971498
Ribosome biogenesis [BR:
ajj03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
139971498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
Paramyx_P_V_C
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
139971498
NCBI-ProteinID:
XP_071834140
LinkDB
All DBs
Position
8:complement(29821308..29839558)
Genome browser
AA seq
680 aa
AA seq
DB search
MSNSFPRGSVRVSRSGSDRSYYEHDDRESDPQEWNRDRGRGDRSRGRGRGRGNNRDYRPD
AARWQRGRSSRGSRGRSSRSNYRAPGPRSRLDDDDDVSMGGDDNDRLKGQKRYNPYGRKP
RGGRRGSGGRGRSSYNNRQQYPSSRNQDGDDTMGGSNSSWFKVVIPYGAKQSKSWLLESI
KNLCRVPFVPIDYHQENNSSVFHVNDVEASKGLSDVSKRITTPSNHKVIIIVRPSGPPRG
SISAPLSESDIQTLTEVMSKRYDPSSKFLDLSDIYNDTDLKAKSIKVLLNQPTPLKAVLD
IIAQHIPETVGLNLSSNRIYSLVHFTKLSTMAPNVTNLNLSSNLLKHINELQKIKDLKLQ
ELILDANPLCDSFSDQAKYVRSVRGIFRDVIKLDGHDLSPQIGFDVPTTSLPSVGPSFFP
GQEVKTNILQFLQGYYTAFDAQDRSKLIDIYHDQAKFSLSLPFDYGHGSSWYKQLAHHFA
QSRNFKKGQDDYKKDKSLKLIKQGRLAVAACLSELPQTQHDLNSFVVDVSLVQPPLVHFT
VGGVLQEKERSKTVIAFSRAFIVCAGQTGLVVLNDHLTYRQPSEQQKKAFNNPAPTPTHS
PVSAAAPGPSPVVSPVAPAVPDTTVKQQMVQQFIKDSGMNSSFSERCLEENGWDYPTAGA
VFINLKNEGKIPPEAFVQQS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcatttcccaggggctcggtgcgtgtttcgagatctggaagtgatagaagc
tattatgaacacgatgacagagagagtgacccccaagagtggaatagagacagaggacga
ggtgataggagtcgaggaagaggaagaggcagggggaacaacagagattacaggccagat
gctgcaagatggcaacgaggcaggagcagtcgaggttcaagagggagatcgtccaggtca
aactatcgtgctcctggtcccaggtcaagattagatgatgatgatgatgtgtcaatgggt
ggggatgacaatgacagactgaagggacagaaaagatataatccgtatggaaggaaacca
agaggaggaaggaggggttcaggtggaagaggcagaagcagttacaataacaggcagcaa
tatcccagtagtaggaaccaagatggagatgacactatgggtggtagcaattcatcatgg
tttaaagtggtgataccatatggtgccaaacaaagcaagagttggttgcttgagtccatc
aagaacctctgtcgtgtcccattcgtgcccatagattatcaccaggaaaacaattcgtcc
gtgtttcacgttaatgatgtggaagccagtaaaggtcttagtgatgtcagtaaaagaata
accactccctctaatcacaaggtaattattattgtcaggcccagcggtcctcctcgaggg
agcatctctgctcctctcagcgagagcgacattcagacgctgacagaagtcatgagcaag
aggtatgacccttcctcaaagtttctggacctctcggatatctacaatgatacagatttg
aaagctaaatccatcaaagttttgctcaatcagcccacaccattgaaagctgtacttgat
attatagctcaacacattccagagaccgttggactgaatttgtcgtctaacaggatatac
agcctcgtccactttacaaaactatcaactatggcacctaatgtcacaaatttgaacctg
tccagcaatttgctgaagcacatcaacgaactgcagaagattaaggacctaaaattacaa
gaacttattctggacgcgaatccattgtgtgactcattcagcgaccaagcgaaatatgta
cgttctgtccgaggaatctttcgagatgtcatcaaactggatggtcatgacctttcacct
cagattggctttgacgtgccaactacgtcacttcccagtgtgggaccaagtttctttcca
ggacaggaggttaagaccaatatactgcagtttttacagggctactacactgcatttgat
gctcaggacaggagcaaattgatagatatataccatgatcaagccaaattttccctgtca
ctaccctttgattatggacatggtagtagctggtacaaacaacttgctcatcattttgca
cagagcaggaacttcaagaaaggacaagatgactacaagaaagacaagagtctcaagctg
atcaagcagggtcgactcgcagtggccgcatgtttgagtgaactgcctcagacgcagcac
gacctcaattcttttgtcgtggatgtgtctttagtccagccgcccctggtgcattttaca
gttggcggtgtcctacaagaaaaagagaggagcaagactgttattgctttcagtagagca
tttattgtatgtgcaggccagacaggtttggttgtactaaatgaccaccttacttacagg
caaccttcagaacaacaaaagaaggcattcaataatccagctcctactcccacccatagc
ccagtcagtgctgctgcccccggcccgtctccggtggtttcgccagttgccccggcagta
cctgataccaccgtcaagcagcagatggttcaacaatttatcaaggattctggaatgaat
tcttcattctctgaaaggtgcttggaggaaaacggctgggattacccaacagcaggagct
gtatttattaacctcaagaatgagggcaagataccaccagaagcatttgtacagcagtcg
taa
DBGET
integrated database retrieval system
