Apostichopus japonicus (Japanese sea cucumber): 139971764
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Entry
139971764 CDS
T10891
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03022
Basal transcription factors
ajj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139971764
09124 Replication and repair
03420 Nucleotide excision repair
139971764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139971764
03036 Chromosome and associated proteins [BR:
ajj03036
]
139971764
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139971764
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139971764
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139971764
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139971764
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139971764
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
nSTAND3
SNF2-rel_dom
DUF6272
DUF8741
Motif
Other DBs
NCBI-GeneID:
139971764
NCBI-ProteinID:
XP_071834596
LinkDB
All DBs
Position
8:35341132..35364412
Genome browser
AA seq
760 aa
AA seq
DB search
MKLDVDGLDVLFPYEFIYPEQFMYMRELKRSLDAKGHCVLEMPSGTGKTISLLSLIVAYL
LKHPLELTKLIYCSRTVPELEKVVEELKLLIDYYEQETGEKSNILGLALSSRKNLCIHPE
VSREIYGKAVDSKCHSLTASYIREKKEKDPSVPVCDFFEKFDGFGRESTLTSGVYNLDDL
KDAGKQKGWCPYFLSRYTIGYANIVVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNID
NVCIDSLSVHITRRSLDKACNNIETLKKKIDRIKDTDAERLKDEYKRLVQGLRDASTARN
TDAHLANPVLPDEVLQEAVPGNIRNAEHFLSFLSRLVEYLKVRLRIQHVVSESPASFLKD
IYNKVCIERKPLRFCAERLHSLTRTLQLTDIDDLSPVTLVANFATLVSTYTKGFNLIIEP
FDDKTPTIINPILHFSCMDASIAVKPIFDRFQSVVITSGTLSPLDMYPKILDFRPVTMAS
FTMTLARSSICPMICSRGNDQVSITSKFESREDIAVIRNYGNLLVEISCSVPDGVVCFFT
SYIYMESIVASWYEQGIIEKIQKNKLLFIETPDAAETSVALHNYHKACENGRGAVLLSVA
RGKVSEGIDFDHHFGRAVIMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGIMVFADKRFSRADKRGKLPRWIQEHMKDSLLNLSTDEVVQVSKKF
LREMAQPFRREDQLGHSLLTLEQLESVDMKKKLDQTIHHN
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgatgtggatggtctggatgttctcttcccgtatgagttcatatatcctgag
cagtttatgtacatgagagaactgaagagatccttagatgctaagggtcattgtgtgctt
gaaatgccatcggggactggcaagacaatatctctgctctccctgattgttgcttatttg
ctgaagcaccccctcgaactgaccaaactgatttactgctcccgaactgtccctgagttg
gagaaggtcgtcgaagaattaaaactgctgatcgactactatgagcaagaaaccggagaa
aaatcaaacatcttgggtctggctttgagttccagaaagaatctttgcattcacccggag
gtttcaagggaaatatacggaaaagcagtggacagtaagtgtcacagcttaaccgcatcc
tacattcgagagaagaaagaaaaggaccctagcgtacctgtttgtgacttttttgagaaa
tttgacggttttggaagagaatcaacgttaacatctggagtgtacaatctcgatgacctt
aaggatgctgggaaacaaaaaggctggtgtccctacttcttgtctcgatacacaattggt
tatgcaaacattgtggtttacagctatcactacctcctggaccctaaaatagctgaactt
gtttccaaagagctgtccaaggaatcggtggttgtgtttgatgaagcacataacatagac
aatgtctgtattgactccttgagtgtgcacatcactagaagaagccttgataaagcatgc
aacaacattgaaaccttgaagaaaaaaattgacagaatcaaagatacagatgcagaaagg
ttgaaggatgaatacaagaggttagtccagggtctgagggacgccagcacagctaggaat
acagacgctcatcttgccaaccctgtacttcctgacgaagtactccaagaggctgtcccc
ggtaacatcagaaatgccgagcacttcctcagtttcttgagtcgtctggtggagtacctg
aaggtcaggttgaggatccaacacgtagtgtccgagagtcctgcctctttcctgaaagat
atctacaacaaagtttgcatcgagagaaaaccactcaggttttgtgctgaacgacttcat
tctctgacaagaactttgcagttgacagacatagatgacctttcacctgtgaccctggta
gctaactttgccaccttggtcagcacctacaccaaaggttttaatctgattattgaaccc
tttgatgacaaaacgccaacgattataaatcctatcctccactttagctgcatggatgcc
tcgattgctgtcaaaccaatatttgatcgattccaatctgtggttatcacatcagggacg
ttgtcaccattagatatgtatcccaagatcctggacttcagacctgttaccatggcgtcg
ttcaccatgacgttagccaggagttccatctgtccgatgatctgttccaggggaaatgat
caagtctcaatcacttcaaagtttgagagcagagaagatatcgctgtgatacgtaactac
ggcaaccttttggtcgagatcagctgttcagtaccagatggtgttgtttgtttctttaca
agttacatttacatggaatctatagtagcatcctggtatgaacaaggcatcatagagaag
atacagaagaataaactactcttcattgaaacaccagatgcagcagagactagcgttgct
cttcacaactaccacaaggcatgtgaaaatgggagaggagcggtactgctgtctgtcgct
aggggcaaagtatcggagggaattgactttgatcaccattttgggcgagcagtgattatg
ttcggaatcccatacgtgtacacccagagcaggatcctgaaggcgaggctggagtatctt
agagaccagtttcaaatcagggagaacgacttcttaacattcgatgcaatgagacacgcg
gctcagtgtgttggaagagccctacgtggtaaaaccgactatggaatcatggtttttgct
gataagaggttttccagagcagacaagaggggtaaactacctcgatggatacaggaacac
atgaaggatagcctcctcaatttgtccaccgatgaagtcgtccaagtcagcaaaaagttt
ctcagggaaatggctcaaccttttagaagggaggatcaactgggtcattcattgttgact
ttagaacaattagagtcggtcgacatgaaaaagaagctagaccagactatccatcacaat
tga
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integrated database retrieval system
