Apostichopus japonicus (Japanese sea cucumber): 139973588
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Entry
139973588 CDS
T10891
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139973588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139973588
03012 Translation factors [BR:
ajj03012
]
139973588
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139973588
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139973588
Translation factors [BR:
ajj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139973588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NB-ARC
DUF5799
DUF7607
TsaE
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139973588
NCBI-ProteinID:
XP_071836488
LinkDB
All DBs
Position
9:35923839..35946132
Genome browser
AA seq
995 aa
AA seq
DB search
MSRRGGPYRGRGRGRGRGRGFGKGWAEGADGSEGEDRGGSRGAGWSRGGSRGRHPAGLKG
AQIGLWYRQQSMGKKKAREINQRAVVQMNTQQVSDISQLLHEVKTEEKQQTTAAASQGAT
VSSWRAKGRITERVRVFYTCNLERRKSLDDVLKEGMEEKSKVNSRFQEMQKFRRKLPSYK
MKEKLTELISSNQVVVISGETGCGKTTQVPQFILDDYISKGQGSLCRVVCTQPRRISAIS
VAERVADERGEPCGQERSTGYQIRLEHKFPRVQGSILYCTTGILLKWMESDSLLNSVSHV
VLDEIHERDILSDFILIILKNILKTRKSLKLILMSATLNAEMFSEYFNNCPMINIPGFTF
PVTEFWVEDVFTMIEYRPPVSQQRKEPKWWKYARKNKIREDEMKKENKFHERFEEYITSM
RECYPPDVVDTVANMDHEMFDINLGAELIKHICLKRPDGAILVFLPGWDQISKINDQLMK
QQMFRSPKFRIIPLHSLMPSVNQRQVFDRPPEGVRKIIISTNIAETSITIDDVVYVVDMG
RVKETNFDVKNNLSTLKPEWVSKASACQRRGRAGRVQPGECFHIYSQLKADLLNEYQQPE
MLRTPLESICLRIKSLKLGLVEPFISKALQPPDEGAVKLAIQTLQQLNALDNNEDLTPLG
YHLSLLPVNPRIGKIILFGAIFCCLDPVLTIAASLDFKDPFVIPLGKEEVADRKRLELSA
GSCSDHIMLVNAFRRWEEVRVNHAMEDEFCWEYFMSKSTLKMIDNMKGQFCELLYDIGFI
QSRSCKDEAANQNSDNNALIKAALCAGLYPNIAKVLPSPGFNKHTGRPKKPKIVAVPHGR
VELHLKSVNAQETNFPSKWLLYHTKIKSSSVFLHDTSAIGPYPLLFFGGEISLLNDEGHE
TICIDKDIRFHAPFQTANLVKDLRKELDKLLESKIEKPGPTEWSSSSTEGRIMKAITDLL
STRGGEEDDRDEETPPAERKKDQHYRHDRYQDWRN
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagaggaggcccctacagaggacgtggaagggggcgtggaagggggcgtgga
tttggaaaaggttgggctgaaggagcagatggtagtgaaggtgaggacagaggagggagt
agaggggcaggatggagtagaggaggaagcagagggcgccatccagctggattgaaagga
gcgcagattggactgtggtacagacagcagtcaatgggaaagaagaaggcaagagaaatt
aaccagagagctgtagtacaaatgaacacacaacaagtatctgatattagccaactattg
catgaagtgaaaacagaagaaaagcaacagaccacagctgctgcctctcaaggggcaact
gtgtcatcgtggagagctaaaggaaggataacagaacgagtccgagtcttttacacatgt
aatcttgagagaaggaagagtttggacgacgtcctgaaagaaggaatggaagaaaagagc
aaagtcaatagcagatttcaagaaatgcagaaatttaggaggaaactcccatcgtataag
atgaaggagaaattaactgagctcatcagctccaaccaggtggtggtcatttctggtgaa
actggctgtggtaaaacaactcaggttccacaatttattttagatgattacatttccaaa
ggtcaagggtcactctgtcgagtggtatgtacgcaaccaaggagaatcagtgctatttca
gtcgctgaaagagtcgctgatgagaggggtgaaccgtgtgggcaggagaggagtactggt
taccagatccgattggaacacaagtttccccgggtccaaggatccatcttgtattgtacg
acaggaatcttactaaagtggatggaatcagatagcttactgaattctgtatcacatgtg
gtgcttgacgagatccacgaacgagacatcttgagtgacttcatcctcatcatcttaaag
aatattctcaaaacaaggaaatctctcaagttaattttgatgagtgctaccctgaatgcg
gagatgttctcagagtactttaacaattgtccgatgatcaacattcctggcttcacattc
cctgtgacagagttttgggttgaagacgtctttaccatgatagagtacaggcctccagta
tcccaacagaggaaagagccgaaatggtggaaatatgctcgcaaaaataaaatcagggag
gatgagatgaagaaagagaacaaattccatgaacgatttgaagaatatataacatctatg
agggaatgctatcctcctgatgtggttgacaccgttgctaacatggatcatgaaatgttt
gatattaaccttggtgcagaacttattaaacacatctgtttaaagcgacctgatggagca
atattagtttttcttccaggatgggaccagatcagcaagataaatgaccaactaatgaaa
cagcagatgttcagatcaccaaagttcagaatcattccacttcattcattaatgccatcc
gttaaccagagacaggtatttgatcgacctccagagggtgtacgtaagattatcatctct
actaacatcgccgagacgagtatcaccattgatgatgtggtgtatgtcgtggacatgggt
cgtgttaaagaaacaaactttgacgtaaagaacaacctgagcacattgaagccagagtgg
gttagtaaagcgtctgcctgtcaaaggcgaggaagggctggaagggtacaaccaggtgaa
tgcttccacatctacagtcaacttaaagcagatctcctgaatgaataccagcaaccagag
atgcttaggacaccactggaatctatatgtctgagaatcaagtctcttaaacttggtctg
gtcgagcctttcatcagtaaggcattgcagccccctgacgaaggagctgttaaacttgcc
atacaaacactacaacaattgaatgccttagacaataacgaggacttgacacccctaggg
taccacttgtccctcctaccggtcaaccccaggattggtaaaattatcctgtttggtgct
atattctgctgcctggacccagtccttaccatcgctgccagtttagattttaaagatcca
tttgtcatcccattgggtaaagaagaagtagcagatagaaagagattggagttatcggct
ggaagctgcagcgatcacatcatgttagtgaatgccttcaggagatgggaggaggtaaga
gtcaaccatgcaatggaagatgaattctgctgggagtacttcatgtccaagagcacctta
aagatgattgacaacatgaaaggccagttctgtgaactgctgtacgacattggatttatc
cagagcagaagttgcaaagacgaggctgctaatcagaactcagataacaatgccttgatc
aaggctgccctctgtgcaggactttatcctaacatagcaaaagtacttcctagccctggt
tttaacaagcacacaggaagaccaaagaaaccaaagattgttgcagtgccacatggccgt
gtcgagttacatctgaaatctgtaaatgcacaagaaacaaactttcccagcaagtggctg
ttataccataccaagataaaatcatctagtgttttcttacatgatacatcagccatcggt
ccatatccgttgctcttttttggaggagaaatctctttgttgaacgatgaaggtcacgaa
acgatttgcatagacaaggacatcagattccacgctccatttcagacagctaatctggtc
aaggacctgaggaaagaacttgataaactcttagagagtaaaatagagaaacctggacca
acagagtggtcaagctcctcgactgaaggtagaataatgaaagccattacagacctcctc
agtaccagaggcggagaagaagatgaccgtgatgaggaaactcctcccgcggagaggaag
aaagatcaacattatcgtcacgatagataccaagattggcgaaactag
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