Apostichopus japonicus (Japanese sea cucumber): 139975733
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Entry
139975733 CDS
T10891
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03008
Ribosome biogenesis in eukaryotes
ajj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139975733
09123 Folding, sorting and degradation
03018 RNA degradation
139975733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139975733
03009 Ribosome biogenesis [BR:
ajj03009
]
139975733
03016 Transfer RNA biogenesis [BR:
ajj03016
]
139975733
03036 Chromosome and associated proteins [BR:
ajj03036
]
139975733
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139975733
mRNA degradation factors
5'-3' decay
5' exonucleases
139975733
Ribosome biogenesis [BR:
ajj03009
]
Eukaryotic type
Pre-60S particles
RNases
139975733
Transfer RNA biogenesis [BR:
ajj03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139975733
Chromosome and associated proteins [BR:
ajj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139975733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
139975733
NCBI-ProteinID:
XP_071839943
LinkDB
All DBs
Position
11:complement(20249153..20285617)
Genome browser
AA seq
2186 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKENQIPEFDNLYLDMNGIIHNCSHPNDDDVHFRMPEEKM
FKDIFHYIEVLFRIIRPRKVFYMAVDGVAPRAKMNQQRGRRFRSAKEAICKEKEAISKGE
VLPTEKRFDSNCITPGTEFMVRLQKQLVYFVNQKVTNDRLWQGVRVYLSGHETPGEGEHK
IMDFIRSEKCAKDYDPNTRHCLYGLDADLLMLGLVSHEPHFSLLREEVRFGRQAQSQRPT
TPEETTFHLLHLSLLREYLAEEFTELRSLPWFDIECIIDDWVMMGFLVGNDFIPNLPNMH
INHGALPDLYQMYIKLLPSLNGYINNNGKLHLRRFETFLKALSKHDEDAFKQTMEEFDYL
TSKKSKEAWKSQRVQKKMEEKEMRKKLAEQNMILQHAIKYESNPLSEDLEDDNESVDSLA
EELKNSGLQIMDFSDASDEDCDTSALELKMKKRQYYRDKLEKDIVSDEEVKVLALEYVRA
IQWILHYYYDGVQSWSWYYPFHYAPYVSDITGFSNMKLEYDMSKPFLPFQQLLAVLPAAS
KDFLPEAYQGLMVNSNSPIIDYYPAEFEEDLNGKQQSWEAVVKIPFIDEKRLLTAMAEQD
RYLKESEIARNTHSEHLLFSYQADLQFVFPSSLPGHFPDIPNCHAKCQKIPLNFFWLPKE
KIRKGLCQGVKLGVYYPGFPTLHHLKFESELKKDDVKVFQQNSRGENTILKVIDTTNVKH
AEEIYTQLLGKIIYAEWPHLKEVRVMAVSDCKKRFELVESAGANQRNMTEKLSVKCTDLT
KKDVERFYDGEVSVIESHYHKRKGVLIGPTKVLVYACPLLGRKYICGNGGVISLEKQWAP
TPQIFAYQMTVKDIAVHDESFKQFKTLSEVFPKHSECFMLGSPNYGALGKVVETKEDKVT
VQFIVPSEPDFHHIMRKEQKFQMQYFPAYVLAKQLSVSPHIVSRITGTIFISKGPPPSTG
VDLDAKSGSRINIGLNLKFNKAGEEVPGYTKKREDGAQWQYSKKLLDVLRDYIVSFPEIF
DMLSGTRSQSDVFYETDVFGSSSTRLKEVKEWLAELECTKVAKAKIGQLALDEPIIKLIE
EEVAKASCEKPKKVKLMVRPHLLHRPFEFQGNLIPDPQATYQLYDRVINVRDGYSVPLGH
KGVVVGIQDGATILDSIYEVIFDEEFVGGLKLRCSNHRGYRMSASALMNISYGSRRGAKS
EKPLAVVKPQQNEIRFFNPTSTAPHTQEQQWYANKINKLGVSKKEGGEPPSDTANRTGAR
KKSSAPSSRNKQAEETQNIATPPSFASILKPSGPQTKPQSQLTQEEVKSGPPKYTILSRK
DEASGKKVLRKRERLVKRDSNLTTSSYGPSDESSNSSEAVGTSPEQSDSPPAVPSPVHKN
GGGTERGVRDNSSKDKLSELWEKLKVGDGTSGGLNPPPTASTAAYQLEEGRVRQDHPEDM
VPTASNHPTVTKGRSTATSRRENTESSDPMSPDEIWDEESDFVQGEDTEDEERKRVEEME
KERMTPNTYAKIETKEKLCQLLNLSHITGGSSPGVEPAEPTTRTGPSSEIGSQVKWMSFQ
ELLAAGSPKGKVPEQNHPPGFSPLEYLRVKAAPPTNTNLLFPSGAQQNLFAGAIGKPLLS
PDKSLGLSQIGQQSLNKFPGPMPPHHQQQVSPGLPVSRPSTNMPEKSAFQPVPQQQQQHQ
QQLQQQQQLQQQLQQQQQLQQQQQALNQQPRFPPTGFNTPPKQYPHLPFGMMPGNQRMRG
MVVPGMGFVPPVGSHGGFMPQRPMVPNAPQYQQFHGHGQMGPNAVPNVIKQQGQTFHNMP
QQHGLPEPPRNPPLMHGAPPGKPMVHTSNISHPAAGGSVPNMMQRAGPNVNQPLGPLHGT
PNSTMVIPGTSRYPPPIGHQLSQPSGQQSFSNPLSPNPIQSPERQRSPPGQPGFPPVSDS
SSMPSVGGSAGGGGGGGVHAAPGQQQDTMLNKLRAFCETRGLRHPNYEYIDTDIMGQYFV
VIYLPTGQIISGEPCTGRRNALELAAFKALQVMRSFAEAQDASQSQKSSAQFVPLQVTKK
LTPQKTPNPDDILDSVRLGQPLVQGGPDHQERVPMKDYSQTEPLPFLDQTPQRVPTMSGY
TLTGPEGPQTLLERSPAGPVHQPTADHMPITPRPQPPVAHQSVPARAEPITEDMSPAPKA
GGPRTRGRRQGAKGGGAKLAINFGGD
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaattttaccgctggataagcgaacgatatccttgcctgagtgaagtt
gtgaaagaaaatcagattccagaatttgataatttgtacctagacatgaatggtatcatc
cataattgctcacatcctaatgatgacgatgttcacttcagaatgcccgaggagaagatg
ttcaaggatatatttcactatattgaggtgctgtttcgcattataagaccacgcaaggtg
ttctatatggcagtggatggagtagcaccaagagctaagatgaaccagcaacgtggacga
agatttcgatcagccaaggaagccatctgcaaagaaaaggaagccatctctaagggagag
gttttaccgacggagaaaagattcgattccaactgtatcacccccggcacagagttcatg
gtacgactgcagaaacagctcgtgtacttcgtcaaccagaaggtgacaaacgaccgtctc
tggcaaggagtgcgagtgtacctctcaggacacgagaccccaggagagggcgagcacaag
ataatggacttcattcgatccgagaagtgtgcaaaggattacgatccaaacacaagacat
tgtctttacggactggatgctgaccttctcatgctaggattggtttcccacgaacctcat
ttctcgctgctgagagaggaggttagattcggtagacaggctcagtctcaacgacctacc
actcctgaggagactacattccatctgctgcatttgtcgttactcagggaatacctcgca
gaagagttcaccgaacttaggagtttaccttggtttgacattgaatgcatcatcgacgat
tgggtcatgatggggttcctcgtaggaaatgacttcattccgaaccttcccaacatgcat
atcaaccatggtgccctaccagatctctaccagatgtacatcaaactactcccaagcctc
aacggatacattaacaacaacggtaagctccacctgaggaggtttgaaacattcctgaaa
gctctctccaagcatgatgaagatgctttcaaacagaccatggaggagtttgactatctc
acctccaagaaatcaaaggaagcttggaagagccagagagttcaaaagaagatggaagaa
aaggagatgagaaagaagttggcggaacagaacatgatattacagcatgcgattaagtac
gagtcaaaccctctcagtgaagacttggaagatgacaacgaatctgtagattcgttggct
gaggagcttaagaacagcggcctccaaatcatggacttctcagatgctagtgatgaagat
tgtgacacatctgctctggaattgaagatgaaaaagaggcaatactacagagataaactg
gagaaggatattgtttctgatgaggaagtcaaggtgctagcgctagaatatgtgagggcc
atacagtggatcttacactattactatgatggtgtccagtcctggagctggtactatccg
ttccactatgcgccctacgtctcggacatcactgggttcagtaacatgaagttggagtac
gacatgagcaaaccgttccttcccttccagcagctgctggccgttcttcctgctgcaagt
aaagattttctccctgaagcctaccagggtctgatggttaattccaattctcctattatt
gactactacccagcagagtttgaggaagacctaaacggcaaacaacaatcttgggaagcc
gttgtgaagataccattcatagacgagaaacgtttgctgactgccatggctgagcaagac
cggtacctcaaggagtcagagattgctagaaatactcacagcgagcatcttctcttcagt
taccaagccgatctgcaatttgtattcccttcctctctgccaggtcactttccggacatt
ccaaactgtcacgccaaatgtcagaagatacctctgaatttcttctggttaccgaaagag
aagatcagaaagggcctttgtcagggggtgaagctcggtgtctactacccgggattcccg
accctgcatcaccttaagtttgagtccgaactcaagaaagacgatgtcaaagtatttcag
cagaacagccgaggagagaataccatcttgaaagttatcgataccaccaacgttaagcat
gcggaagagatctacacccagttgctgggaaagatcatctacgcagaatggccgcacctg
aaggaagtcagagtgatggccgtctctgactgcaagaagcggtttgaactggtggaatcc
gcaggtgcaaaccagaggaacatgacagagaaactctcggtcaaatgcacagatctgacc
aagaaggacgttgagaggttctacgacggcgaggtctcagttatcgaatctcactaccac
aagaggaaaggtgtcttgattggtccaaccaaagtcttggtctatgcctgtcctctgctt
ggacgaaagtacatctgtggtaatggaggtgtcatcagcctggagaagcaatgggctcca
acaccacagatatttgcctaccagatgacagttaaggacattgccgtacacgatgagtca
tttaaacagttcaagactttgtcggaggtttttccaaaacattcagaatgtttcatgttg
ggaagtcctaactatggtgccttaggaaaggtcgtggagaccaaagaagataaagtaacg
gtgcagttcatcgtcccctcggaacctgacttccatcacatcatgaggaaagaacagaaa
ttccagatgcagtatttcccggcatacgtcctggctaaacaactgtccgtttcacctcac
attgtgtcaagaatcacaggaacaatcttcatttccaaaggccctcctccaagtactgga
gttgacttggatgccaagagtggcagcagaatcaacattggtttgaatctcaaattcaac
aaagctggagaagaagtaccaggctatactaagaagagggaagatggggcacagtggcag
tattccaagaaattactagatgtcttacgggattatatagtgagctttcccgagatcttt
gacatgctatcagggaccagatctcaatccgacgtattctatgaaactgatgtctttgga
tcctccagcactcgtctgaaggaggtgaaggaatggctggcagaactggaatgtaccaag
gttgctaaggccaagattggtcagttggctttagatgaaccaatcatcaaactgattgaa
gaagaggttgccaaggcctcatgtgagaaaccaaagaaagttaagcttatggtccgtcct
cacttactacacaggccctttgaatttcaagggaacctaataccggacccccaagctacc
taccaactgtatgaccgggtcatcaacgtcagggatgggtattccgttcctctcggacac
aaaggagtggtcgtcggcattcaggatggtgccaccattttggattcgatttacgaggtc
attttcgatgaggagtttgtgggcggtctgaagcttcgttgcagcaatcaccgtggttac
aggatgtcagcttcggccctgatgaacatttcgtacggctcgaggagaggagctaaaagt
gagaaaccgttagcggtggtgaaacctcaacagaacgaaatccgtttcttcaatccaaca
tcgactgcgcctcatacacaagaacagcagtggtacgccaataaaataaacaaactaggt
gtttccaaaaaggagggtggggaacccccgtcagacacagccaatcggacaggtgccagg
aagaaatcctcagctccatcctccaggaacaaacaagctgaagaaacccagaatatagct
acccctccatctttcgcatcaatattaaagcccagcggacctcagaccaagcctcagagc
caactgacgcaagaggaggtcaaatccggaccccctaagtacacgatcctctcacggaaa
gatgaagcaagtgggaagaaagtcctcaggaagagagagagactggtcaagcgtgacagc
aacctgaccacaagttcatatgggcccagcgatgagagcagcaattcgtccgaggcggtg
gggaccagtccagagcaatcggactctcctccggcagtaccgagccccgttcacaagaac
ggtggtggcactgagcggggggtgcgagataacagctccaaagataaactcagcgaactg
tgggagaagttgaaagttggagacgggacgagtggtgggctgaatccaccacccactgcc
agcacagccgcgtaccagctagaggagggcagggtccgtcaagaccatcccgaggatatg
gtaccgactgccagtaatcaccccaccgtgaccaaaggcagaagtacagcgacctccaga
cgggaaaacacagaatctagtgatccgatgagccccgacgagatctgggacgaagaatcg
gactttgtgcagggcgaggacacagaagatgaagagaggaaaagagtggaggagatggag
aaggagagaatgacgcctaatacatatgcaaagattgaaactaaagagaaactttgccag
ctgttgaatctgagccacattactggagggagctcccccggagtggagccggcagaacca
acgacaaggactggaccgtcgtcagagataggttcacaagtcaagtggatgtccttccag
gaactgctcgctgctggatcaccaaaggggaaagttccagaacagaatcatcctcctggt
ttttcacccttggagtatctacgtgtgaaagctgcaccgccaactaacacaaaccttctc
tttccatccggtgctcagcaaaacctgtttgctggcgccatcggtaagccactactttca
ccagataaatcgttgggactctctcaaataggacagcaatctctcaacaagtttccagga
ccaatgccaccacatcatcagcagcaagtttccccaggtttgcctgtttcaaggccatcc
actaacatgccagagaaaagtgcctttcagccagtaccccagcagcaacagcaacatcaa
cagcagctgcaacagcagcagcaactgcagcagcaactgcaacagcagcagcaactgcaa
cagcagcagcaagcactcaatcagcagcccagatttccaccgactggttttaacacccca
cctaaacaataccctcatctgccctttggaatgatgccaggtaatcagcgtatgcgagga
atggttgtaccggggatgggatttgtaccacctgtgggtagccatggcggtttcatgcct
cagaggcccatggttcccaatgccccgcagtatcagcaattccatgggcatgggcagatg
ggcccaaacgcagtgccaaatgtaatcaaacagcaagggcaaacattccataacatgcca
cagcaacatggcctgcccgagccacctaggaatccaccattaatgcatggtgctcctccc
gggaaaccaatggtacacacgtcaaacatttctcaccctgctgccggtggttcagtgcca
aacatgatgcaacgtgcagggccaaatgtaaaccaacctctgggacctctgcatgggacg
ccaaattccaccatggtcattcctggtacgtcaaggtacccgccacccatcggtcatcag
ctatcccagccatcagggcagcagtccttttcaaaccctctgtctcctaacccaatccaa
tctccagagaggcagcggtcacctcctggacaaccgggcttccctcccgtcagtgacagt
tctagtatgccatctgtaggcggttcagccggtggaggaggcggaggtggtgttcatgcc
gcaccaggacagcaacaggacaccatgctgaataaactgagagcattctgcgagactcga
ggcttaagacatcccaattacgaatacattgacacagatattatgggtcagtactttgtg
gtcatctatctaccaactggtcaaattatcagtggtgagccttgcacaggaagaaggaat
gctctggagttggctgcctttaaagcccttcaagttatgcgttccttcgctgaggcccaa
gacgccagtcaatcccagaagagctctgctcagttcgtaccgttgcaggtaactaagaag
ttgacacctcagaagacaccaaaccccgatgacattcttgactctgttcgactcggtcaa
cctctggtccaaggtggaccggaccatcaggaacgagtaccaatgaaggactattcacaa
accgaacctctgccattcttggatcagacaccacagagggtcccgacaatgtcgggatat
acactaaccggacccgagggccctcagacattgttggaacgttcacctgctggacccgta
catcagccaacagcggaccatatgccgattacacccagaccacagccaccagtggcacac
cagtcagtgcctgcaagggcagagcctataacagaagatatgtccccggcgcccaaagct
ggtggtccgaggacacgagggagaaggcaaggggctaaaggtggtggtgccaaattggcc
atcaattttgggggggattag
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integrated database retrieval system
