Apostichopus japonicus (Japanese sea cucumber): 139976045
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Entry
139976045 CDS
T10891
Name
(RefSeq) uncharacterized protein
KO
K15542
polyadenylation factor subunit 2
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139976045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139976045
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139976045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
WD40_RFWD3
PROPPIN
PEP5_VPS11_N
Borrelia_P83
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
139976045
NCBI-ProteinID:
XP_071840543
LinkDB
All DBs
Position
11:15454338..15478630
Genome browser
AA seq
1206 aa
AA seq
DB search
MDGSTKLVNSSPQQPGGSFFHYPKLPSYFKQQFPKHYRHKRGQQEPYTPMAQRDYSNYDA
QKPRSIMRRAVDYSSAVVRQLEARVWQRDERDHRWIQPDPSYAHTLIPPSSFSKNPSNAI
TTKFVHCSTNKVRCPVFCVVWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDYSIRC
MSWSHNDLWLLSGDDMGFVKYWQSNMNNVQMFQAHKDQAIRGVSFAPTDSKFASCSDDGT
VRVWDFLRCHEERIMRGHGADVRCVDWHQQKGLIVSGSKDSQQPVKLWDPRSGNPLTTIH
AHKGTVMAAKFSNNGNWLVTASRDHLCKLFDLRVMKEMYTFRGHKKEATSLALHPVHEDL
FVSGGSDGSILFWQVGNEREVGGIESAHDSMVWGLSWHPLGHMLCSGSNDHSTKFWSRNR
PGDKMRDRYNLNTLPIGTSEELREYDDDSAVAAVIPGMGLETSPTVEPFPKEAAKESSGI
PGLDSSADEIAQITPLPQRKVPFARPVPSEFQKEWESKKAPGIAPDLEEQERVKKEKEEA
ERKRKEKQKLEEERLRREFEREQIKKREAEYKEQKEKEKEAHQKETQKRAEEEPMEQGSM
IPGFGPDGPPSVFPMPRSPPPSHLAGDHPPLERRDGFNGPPDGRDMGQPVHIRKERERFR
DKGGDRNRDRERNRERDRERGENRDRFRDRDEFGQPMESDEFDPDLERPPPGRRGRPPHP
GMGGPRRPDMEGPRDHEMRGPGPMGPMHADMEDMREHPRRGPGPMGPRHPDMEDPRDHEM
RGGRHPDMGNPRFRGMDGMRPDRPGPPRGGPHKKPSGGPMPLMSLVLDPPPPQSKEPVLS
PEEPAEGPKRPPPRREHPAPPQSAGLNRPLSPPRKEGPKPLIPGLTSDALRRGDISLEEP
GPGGLSPNHQEMELEKGGKFPNAEFGEGFGGQDMDYRHPPSGGGLHRNDGPPDIDSTPNM
GIPLNRSGPAHRGRPPHIGAGDHHDPHYDSEHSNEPLGFNRSGPSRGRGRDPSARGGRGG
RSPHLENSRQGSGPSSGRGGFGGPRGRFADEEESNRDFPLRQRSLERPYQDADARAAGGP
QRTPRDDKTDKNLSQDEIHQQQGFVGEQGLYEQDEAHEDRGNYSSSAKRTWNDGPGNSEP
LLSNRPPLISSRGGMGRGQRGGSFRGGSPRGGGGHRGGGPRGGGSRGRGAGRGGRGGRGG
RGRGGW
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggacgggagtaccaagcttgtcaacagctccccccagcagccgggaggctctttcttc
cactaccctaagctgccatcatacttcaagcagcagtttcccaagcattacaggcacaaa
aggggccagcaggaaccttatacacctatggcacagagggattactctaactatgatgca
cagaagcctaggtcaattatgagaagggcggtcgattacagttcggccgtagtaagacag
ttagaggctcgagtctggcagagagacgagagggatcataggtggattcaaccagatcct
tcatatgctcatacgctgattccaccgtcatcattttccaagaatccttcaaatgccatc
acaacgaaatttgtccactgttcaaccaacaaagtcagatgtccagtcttttgtgttgtt
tggactccagaagggaggcgtctagtgactggtgcttcaagcggggaatttaccctatgg
aacggcctcacgttcaactttgaaacaattttgcaggctcacgactactcgataaggtgt
atgagctggagccacaacgacctctggctgctgtccggggacgacatgggtttcgtgaaa
tactggcagtcaaacatgaacaatgtgcagatgttccaagctcacaaagatcaagctatt
cgcggcgtaagttttgctcctacggattcaaagtttgcctcctgttcagacgacggtacc
gtacgtgtttgggacttcctcagatgtcacgaggagcgaattatgagaggtcacggtgct
gatgtcaggtgcgttgattggcaccaacagaaaggtttaatcgtgtccggtagcaaggac
agtcaacagccagtcaagctgtgggatcctcgctctgggaatccgctcacgacgatacac
gctcacaagggcactgtcatggcagccaagtttagtaataacggcaactggttggtaacg
gcgtccagggaccatctctgtaagctatttgacctccgggtcatgaaagaaatgtacact
ttcagaggtcacaagaaggaggctacatctcttgccttacatccagtccacgaagacctc
tttgtaagtggcggatcggatggttcaattctgttttggcaagttgggaacgagagagag
gtgggtggcattgaatcagctcacgatagtatggtctggggattaagttggcacccgttg
ggtcatatgctctgctctggatcaaatgaccatagcacgaaattttggtccaggaacaga
cccggtgataaaatgcgtgaccgttacaacctgaacacactgcccatcggaacctctgaa
gaactacgggaatacgatgatgactcggccgttgctgcggtcattcctgggatgggtttg
gaaactagtccgaccgtagaaccgttccctaaagaagctgctaaagagtcatccggcata
ccagggttagactcctcggcagacgagattgcccagatcactccactgccacagaggaag
gtgcctttcgctcgtcccgtcccctccgaatttcagaaagagtgggagtccaagaaagct
ccgggaatcgctcccgatttggaggaacaggagagagtcaagaaggagaaggaagaagca
gaaaggaagaggaaggagaaacagaaactagaagaggagagacttaggagggaatttgag
agggagcagataaagaaaagagaggcagagtacaaagaacagaaagaaaaagagaaagaa
gctcatcagaaagagacccagaagagggcagaggaagaacccatggaacaaggctcgatg
attccaggttttgggcccgatgggccgccgtcagtttttcctatgccaaggtcaccccca
ccgagtcatctcgcaggagatcatccaccgttagaaaggcgtgatggcttcaatggccct
cccgatggcagggacatgggtcagcccgttcacatcagaaaggagagagagagattcaga
gacaaaggtggagatagaaatagggacagggaaaggaatagggaaagagacagagaaagg
ggcgagaacagagatagatttagggacagagacgagtttggacaacccatggaaagtgat
gaattcgatcctgacttggaacggccgccaccggggagaagaggtcgcccaccgcatcct
ggtatgggcggtccaagacgtccagatatggaaggtcccagagatcatgaaatgagaggc
ccaggaccaatgggtcccatgcatgcagatatggaggacatgagagagcatccgaggaga
ggtccgggccctatgggaccaaggcatccggacatggaagaccctagagaccatgaaatg
agaggcggtagacatcctgacatgggtaatccaaggttcagaggaatggacggtatgcga
ccggaccgacctggacctccaagaggtgggccacacaaaaaaccatcgggaggtccaatg
cccctgatgtctctagtgctagatccccctcctccccaatccaaggagcctgtgctgtca
cccgaagaacctgccgaaggtcccaaaaggcctcctcctcggagggaacaccctgctcct
ccgcagtctgctggactgaacagacctctatctcctccaagaaaagagggccctaagcct
ttgatccctggactgacatcggatgcactcagaagaggcgatatctccttagaggaacct
ggacctggcggtctctccccaaatcaccaagaaatggaactcgaaaagggaggcaaattt
cccaatgcggaatttggtgaaggttttgggggtcaggatatggattatcggcatccgcca
tccggcggtggactccacagaaatgatggcccgccagatatagatagtactcccaacatg
ggcattcctcttaataggagtggccctgctcacagaggaaggccaccacatatcggtgcc
ggtgatcatcatgatcctcactatgattcagaacattccaacgaaccgttagggtttaat
cgctcgggcccgagtagaggcaggggtcgagatccatcggcccgaggaggtcgaggtggc
aggtctcctcaccttgaaaattcaaggcaagggtccggtccatcatccggacgagggggc
ttcggaggcccgagaggtagatttgcagacgaagaagagtcgaatcgtgattttcccttg
agacaacgtagtttggagagaccctaccaagacgccgatgcgagagcagccggtggacct
caaagaaccccaagagatgacaaaacagataagaacttgtctcaggatgaaattcaccaa
caacaggggtttgttggagagcaagggttatatgaacaagatgaagcacatgaggacagg
ggtaattactcttcatcggccaaaagaacttggaacgatggcccagggaattctgagcct
ctactctcgaatagacctcctctgataagctcgagaggggggatgggtcgggggcaaagg
ggtggcagctttagaggtggatcacccagaggaggaggaggccatagaggtggaggaccc
agaggtggtggatcgaggggaagaggtgcagggagaggaggcagaggggggcgaggagga
agaggtagaggagggtggtag
DBGET
integrated database retrieval system
