Apostichopus japonicus (Japanese sea cucumber): 139978229
Help
Entry
139978229 CDS
T10891
Name
(RefSeq) spatacsin-like isoform X1
KO
K19026
spatacsin
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
139978229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
139978229
NCBI-ProteinID:
XP_071844303
LinkDB
All DBs
Position
13:complement(26599952..26673906)
Genome browser
AA seq
2606 aa
AA seq
DB search
MAREAGATRSPCITVKKLPKLNCKSYSQHLISHKLLTIFQRDENMRLNACDVSQVSEISE
VVAFQLAEDVQCFSAVEASEVTDGCNAIYILAVTGKDILTLELIRIWRAIDELKFQKFKK
SLPANTLEDGGRSCHASLFLWFDYTSSHFSLLCGAKVFCMLVLQDGSLSISDSFPLEIPN
YDDVIAVQQEESFLFLLHSTGDISIFNSRYLYQAATISFRHFIEVLFQEMSLVDLFKTSK
ASSFTVSTDMKTIILTFSGSKYSIFKIHLNEYFAIFPNHLTKEKRGSDILTNIIGQDNCE
AKQTWQGFMKRTQLSVIQQLAIKPCKYGVTCKCAQNWFDESFKPTSSLSSPKRNTSPQMT
KKKIAGFLAKKERKTFLVEYVDAFQHSTALKTPKQCRDLSMTGLWITESSVVIWYKGQNG
GNHGGICTGSIEEQDLEFYSFTAPTFLAPPVEPVQPIAMVSRNKLQLLAAGVNQDILVNK
LMMYKNASLAETVSHLNQWDHCSIPIHALEVGLRHRQLDTVAFFLKGRETEFRLKPDSNI
KPDMSEANQLWTALNLLSSTIKENMRDSQSQHYSWQLLNLTLSHLHKLIQNTTETKATVL
EKEGNGTIEGVWGRADDLLEIIDKLMQFITELRKYLKGYPTKVSQDEVDSTMRSDKISPW
LGHHSQAGSSFLNWRTFSKQDVIKDAILSQNIPLAQAYLRELQGESTSTLSRKDEIVNVG
QTIAYNALVESNIETAQTMFRNMGFDVPSELKKICFFSANSSLRDFLVQELRGKGHISTQ
ESNVCLFISSLERLYTCQSFEKAKNLAEEGLMSLWKDDALKLPSLQNTKCERFLADNLRT
GEIVLSSETPNCENFNYAHVLFDWIKYWNKTTKDRILLERSIHSKGRDLSTMWSIASESA
WQFLLAHEDWITLKSWIEYTFSSSTVTISGSLPQIAPILQNLILERDFVNRMDYCTTYFK
ERVLGEMARLGIFLSEEISSFNQLLCRLVRSGQLLVSPHILTRVPEGQMFVNSFNQWFIN
YCIHQHLPSVLYIFIEFYSLCLSENEVLNMQLPMSDVPWLEILLNFRWIGKQATDPALVF
QASLANSRLLQAVAQPSVTSLLQDGNVVVALATLLYAPGNITEALNPSTSAEKLWKVDHI
MLEQCLKPYPKLQRAIFPQGEEDGIPPQDITVYQLLKGNIPVHCAKTFAWQTSNNVAEST
DIMHGEMPHFSHADLVKMFAYIESFSFTHYLRQGRPSFAFSAFIINLMQENGSAYKYKIC
QAYMKSYCTAVRNISKPSVTAACVAFAEMLGKSSTSVRVDVHSAGVILEFHKSKLGHLSS
KTPRNTEKRIQDELKNKEEQLVMLLMACLKGSQSSAIYVLEMLERAISAKVNQQFQDCTS
WEASEVWSLAVLFCQRHNLPYSTVYLKQCAEKNQWLQFTCFAQIHQYSRTQILELLKNFT
ISALRDHLSSAFENMKFGPASSKPEQMAANHEQLMATKNIRAKFYAKFGVLSKTDDQHTK
TQEFSVSDNLSDEEVTSEDQFVDDTDVDNDDAVTVPKDLDEKDIPEDFFGIIFHCDAQPQ
PFNALLSHAIASSQPILAVMASCYQNSSPVDCLCTWLYTIINERGRSKFKSSLASAASFQ
WHSWTLHELFRLIYAAIESGAINLVHKGFFIFDKNCPLNLFLRFCCEFLLHFDVTAAKDH
LDSFQSAIQKCKRYENIQLVQLETTHKPKIGNLKWYQQSANQIAIFMLSTCSSHWELSSL
LQLLSEVNFSLIVSSSDPDYSLLYQLNLILKDTSQEHTYFSKLICCEKESFQSECTFILE
RLQDSNQFNKAKMFARLTRLPIDNLIFSQVEKELVKSRPPPQVVGDDAATDELSFWQKCN
DLFKSNRVKPKAAVSFFQNWVNRENTDVVLSSTEKAFILHLAYEWMKKVSQGSAVSQLER
EMWTWRLKVEAEKLAVVNQELHLSHNQEEGDVWECKSQGPQELLFEERRSKSNDEDLNCS
EEQLSALNSILSKLLQRGCVNQAHHLSTQFQHYCQDLEIILSCILLAKGTLQTFQLDSDL
KRLIGAADQRQHRRTSEWQKPGKQTTFGGSNTPPVMRRSVSVVSVPTNFMDQNLEQEVED
EVLKTMKSLSSFCKDGSNCCEQIVTCYQISKVLKKTYEEVVNMAPLNTLKMLLDSHNQHR
IELAKKFVETNILPDNEVASFLTELVLSSLQKFSARRKEGREHDTEGNAAKTLLQGVVSR
LANPTTPISSWADRNEFANLLKLCQNPAVLGNKLMEEVISLIRSHKDPTKQGHLSGGLTL
VLSLEVELLIRAHDCFSICCHMEGISNVLRSTREIFNTLADFKEYPLMVRLLLGVARYSE
MTYVFDELRSKQQIELLLKKGSKDNSLKVSLLDYLKRCEPSDPETYNVVAVKFGMVREIA
TLLEKEGVKKLNFVSNRKMDTNLEVQNSLEEILQDFKNAAQNYAKADCLRHAERCVQQAR
LVALQLHLLSHGIRVISLMDNELVSFLTKHNNFHQAYIVHEAYGKQFDWSISIYYQVVEK
GDFVYFEDYRSALILTDSLFRDVAQLYGKEKSRGGTVTNNMKQLVMLCPDIVAKYRIAAE
FGFQEITSLLLQDENAAYLKDVTMLM
NT seq
7821 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgaagctggggctacacggtccccctgcataacggtgaagaagctcccaaaa
cttaattgtaaatcctacagtcagcacttaattagccacaagttacttacaatatttcaa
agagatgaaaatatgcggcttaatgcgtgtgatgttagtcaggtatccgagatatctgaa
gttgttgcctttcagctcgcggaagacgtccaatgtttctctgcagttgaagcatcagaa
gtaactgatggttgtaatgccatctatattttggcagtaaccggaaaagatattcttaca
ctggaacttatcagaatttggagagccatcgatgagctgaaatttcagaaatttaagaag
tccttgcctgcaaatacattagaggatggaggcaggtcatgtcatgcatctctcttcctt
tggtttgactacacttccagtcacttttctttgctatgtggtgccaaagtattctgcatg
ttggtgttacaagatggaagcttgagcatttctgacagctttcctctggaaatacctaat
tatgatgatgttattgctgtccaacaggaagaaagttttctgtttctcctccattcaaca
ggagatatttcaatattcaattctaggtacttgtaccaagcagctaccatatcattcagg
cactttatagaagtgctattccaagaaatgtcactggtggatttgtttaaaactagcaag
gcttccagttttacagtttcaacagatatgaaaacaattatattgacatttagtggctca
aaatacagtattttcaaaatacacctaaatgaatactttgcaatatttccaaaccatttg
acaaaagagaaacgaggaagtgatattttgacaaatataatagggcaggacaattgtgaa
gcaaaacaaacttggcaagggtttatgaagaggacacaattgtctgtgattcaacaactg
gcaatcaagccatgcaagtatggtgttacttgtaagtgtgctcaaaactggtttgatgaa
agctttaaaccaacctcaagcttgtcatctcccaaaagaaacacttctcctcagatgaca
aaaaaaaagatagcaggtttcttagcaaaaaaggagagaaagacatttctggtggagtat
gttgatgcttttcagcatagtacagcattaaaaacaccaaaacaatgcagagacttatcc
atgactgggctttggataacagaatcgtcagtggtaatctggtacaagggacaaaatgga
ggaaaccatggtggcatctgcacagggtctattgaagaacaagacttagagttttatagc
tttactgcaccaacatttcttgccccacctgtggaaccagtgcagcccattgctatggtc
tccaggaacaaacttcagctcttagctgctggtgtgaatcaagatatcctggtcaataag
ttaatgatgtacaaaaatgcatctctagcagagactgtcagtcacttgaatcaatgggac
cattgcagtatcccaatccatgctttagaggtagggctgagacatcgacaactcgacact
gttgcatttttcttgaaaggcagagaaacagagttccgcttgaaacctgattctaacatc
aaaccagacatgtcagaggccaatcaattatggacagctcttaatcttctgtcttcaacc
atcaaagagaatatgagggactctcagtctcaacactattcatggcaactcctcaacctc
accctctctcatcttcataaactaattcagaataccactgaaacaaaggcaacagttttg
gagaaagagggcaatgggaccattgaaggggtttggggtagggcagatgatctgttagag
atcattgacaaactgatgcaattcatcacagaactaaggaaatatttgaaaggatatcca
acaaaagtgtctcaagatgaagttgacagtactatgagaagtgacaaaatcagtccatgg
cttggtcaccattctcaagcaggttcatcctttttaaattggagaactttttcaaaacag
gatgtaatcaaagatgccatccttagccaaaacattcctttggcccaagcttatcttcga
gagctgcaaggagaatctacatctacacttagcagaaaggatgagattgtaaatgttggg
caaaccatcgcatacaatgctcttgttgagagtaacattgaaactgctcaaactatgttc
cgtaatatgggttttgatgttcctagtgagctgaagaagatatgcttcttctcagctaat
agtagtcttagagacttccttgtacaggaactgaggggaaaaggtcatatttcaacccaa
gagagcaatgtctgtctattcatcagtagcttggaaagactctacacctgccagtcattt
gagaaagccaagaacctagctgaggaaggtttaatgagtctgtggaaagatgatgccctc
aaattgccttccctacaaaatacaaaatgtgagagatttcttgctgataatttgaggact
ggtgaaattgtgctgtcatcagagacaccaaactgtgaaaacttcaactatgcacatgtc
ttgtttgattggatcaagtattggaacaaaactacaaaggatcgtatacttctggaaagg
tcaattcactcaaagggcagggatttatccacgatgtggtcaatagcatctgagtcagct
tggcagtttctattagcacatgaggactggattactctgaaaagctggatagaatacact
ttctcatcatcaactgtaacaatttctgggagtctacctcagattgcccccattctccag
aaccttattcttgagagagattttgttaacagaatggattattgcactacatactttaag
gagagggttcttggtgaaatggccagacttggcatatttcttagtgaagagatttcatca
tttaatcaactgttatgtcgtctggtgaggagtggacaactgttagtatcaccacacata
ctgaccagggttccagagggtcagatgtttgtaaacagctttaaccagtggtttattaac
tattgtatccaccaacacttaccatcagttttgtatatcttcattgaattctatagttta
tgcctctctgaaaatgaagtcctcaatatgcaactgccaatgtctgatgtaccttggttg
gaaattttgttaaacttcagatggattggaaagcaggctacagacccagcccttgtcttt
caagctagtctagcaaattccaggctccttcaagcagtagcccagccttctgttacaagt
ctcttacaagatggtaatgttgttgttgctttggcaacattactttatgctcctggcaac
atcactgaggcattaaatccctcaacaagtgcagaaaagctttggaaagttgaccatatt
atgttggaacaatgtttgaagccatatcctaaactgcagagggcaatatttccacaagga
gaggaagatggtatccctcctcaagatatcacagtttatcagctgctaaagggaaacatt
ccagtgcattgtgccaaaacttttgcatggcaaacatctaacaatgtggcagaaagcaca
gacattatgcacggagagatgcctcacttttctcatgctgacttagttaaaatgtttgca
tacattgagagcttcagcttcactcattacctcagacaaggcaggccatcatttgcattc
tcggctttcatcataaatttaatgcaagaaaatggaagtgcttacaaatacaaaatatgt
caagcctatatgaaatcctattgcacagctgtcagaaacatttccaagccatctgtcaca
gctgcttgtgttgcatttgctgaaatgcttggtaaaagcagcacttcagtgagggttgac
gtacattctgctggtgtcattttggaatttcacaaatccaaactgggtcatctgagcagc
aagacaccaagaaatacagaaaaaaggattcaagatgaactaaaaaacaaagaggaacag
ctagttatgctactcatggcgtgcttgaaaggatcacaatccagtgccatatatgtgcta
gagatgttagaaagagcaatatcagccaaagtgaatcagcaattccaagattgtacttca
tgggaagcatctgaggtctggagtttagctgttttgttctgtcagcggcacaaccttcca
tactctactgtttatcttaagcagtgtgcagagaaaaatcagtggctccaatttacctgc
tttgcacaaatccatcagtattcccgaactcagattcttgaacttctgaagaactttaca
atctcagcattaagagatcatctaagcagtgcatttgagaacatgaaatttggaccagct
tcttccaaaccagaacaaatggcagcgaatcatgagcagctaatggccacaaaaaacatc
agagctaaattttatgccaaatttggggttctgtcaaaaacagacgatcaacacacaaaa
acccaagagttctctgtttctgataacctgtcagatgaagaggtaacctctgaggatcag
tttgttgatgacactgatgttgataatgatgatgctgttacagtaccaaaagatttggat
gaaaaagacattccagaggatttctttggcattatatttcactgtgatgcccaacctcag
ccattcaacgcccttctctcgcatgcaattgcatcaagccaaccaatattagcagttatg
gcctcctgctaccagaattcatctcccgtagattgtctgtgtacctggctttataccatt
atcaatgaaagaggaaggtcaaagttcaaatcttctctggcatctgctgcatcattccag
tggcattcttggactcttcatgaactctttagactgatttatgcagctatagagtctggt
gccatcaacttggtgcataaaggctttttcatatttgataagaattgcccattgaacttg
ttccttagattttgctgtgaatttttgttgcactttgatgtaactgcagcaaaagaccac
ttggattccttccagtcagcaatacaaaagtgtaagcgatacgaaaatattcaactggtg
cagctagaaacaactcacaaacccaagattgggaatttaaagtggtaccaacagtcagca
aaccagattgcaatatttatgttatctacttgttccagtcactgggaattgtccagtctt
ctgcaactactctctgaggtcaacttctccttaattgtctcctcatcagatccagattac
agtttactttaccagctgaatcttatcttgaaggatacttctcaagaacatacatatttc
agcaagttgatatgctgtgagaaggaatcatttcaatctgagtgtacctttatcttggag
aggctacaagattcaaatcagttcaacaaagcaaaaatgtttgctcgtcttaccaggtta
cccattgacaatcttatcttcagtcaggtggaaaaggaacttgtcaaatcacgtccacca
ccacaagtggtaggcgatgatgctgctactgatgaactctcgttctggcagaaatgtaat
gatctcttcaaatcaaatagagtcaagccaaaggctgctgtgtcattcttccaaaactgg
gtgaacagggaaaatacagacgtggttttgagttccactgagaaagctttcatacttcac
ctagcctatgaatggatgaagaaggtctcacagggatcagcagttagccaactggaaaga
gaaatgtggacttggagactaaaagtagaagcagaaaagctagcagttgtaaatcaagag
cttcatctttcacacaatcaagaagaaggggatgtctgggaatgtaaatcacaaggacct
caagagttactttttgaagagagaaggagtaaaagcaatgatgaagatttgaactgttct
gaggagcaattgtctgctctgaatagcatcctctctaagctccttcaaagaggctgtgtc
aatcaggcacatcatttgtccactcaattccagcactactgtcaagatttagagataatt
ttgtcatgcattctcctggctaaaggaactttacaaacatttcaacttgatagtgacctg
aagaggttgattggtgctgcagatcaaagacaacatcgtcgcaccagtgaatggcagaag
cctggaaagcagactacatttggtggaagcaacacaccccctgtaatgaggaggtctgta
agtgtggtctctgtgccaaccaactttatggatcaaaacttggagcaggaggttgaagat
gaagtcttgaaaacaatgaagtcattgtcatctttttgcaaggatggcagtaattgttgt
gagcagattgttacttgttaccaaattagcaaggtgttgaagaagacctatgaagaagtt
gttaacatggcacctctcaacactctaaaaatgctacttgactcacacaatcagcataga
attgaactggccaagaaatttgttgagacaaatattttacctgacaatgaggtagcaagc
tttcttacagagcttgtactttcaagtcttcagaagttttctgcaagaaggaaagagggt
agggagcatgacactgaaggcaatgctgccaaaacactcctgcaaggtgtagtgtcaaga
ctggctaatccaactacaccaatatcctcttgggcagacagaaatgaatttgccaatctc
ttgaagctctgtcaaaatcctgctgttcttggtaacaagctaatggaagaagtgatctca
ttgataagatcacacaaagaccctacaaagcaaggtcatctgagtggtggacttacttta
gttctgtctcttgaggttgagcttctgattcgagctcatgattgcttttccatctgttgt
cacatggaaggaatttcaaacgtccttcgctcaactcgagaaatatttaacaccctagca
gacttcaaagaatatcccctaatggtgaggttacttttgggtgtggccagatacagtgag
atgacatatgtatttgatgaacttcgatctaaacagcaaattgaattgctcctgaaaaaa
ggatcaaaagataacagtttgaaggtgtcgttactcgattatctgaaacgctgtgagcca
tctgatcccgagacatataacgtggttgctgtcaagtttggaatggtcagagaaatagca
acactcttggagaaggaaggagtcaagaagctcaactttgtatcaaacagaaaaatggat
actaatctggaagttcagaacagtctggaagaaattttgcaagatttcaagaatgcagca
cagaattacgcaaaggctgattgcttgagacatgctgagcgttgtgttcaacaagctaga
ttggtagcacttcagcttcatcttctatcacatggtatacgagtgataagtcttatggat
aatgagcttgtctcattccttaccaagcacaacaactttcatcaggcatacattgtccat
gaggcctatggcaaacagtttgattggtcaatttctatttattaccaagtggttgagaaa
ggtgactttgtgtactttgaagactacagatctgctctcattctaactgacagtcttttc
agggacgtcgcacagttatatgggaaggaaaagtcaagaggtggtacagttactaataat
atgaagcaacttgtcatgctttgtcctgacattgtagcaaagtacagaatagcagcagag
tttggatttcaggagatcacttcattattacttcaagatgaaaatgcagcttaccttaag
gatgtcacaatgttgatgtag
DBGET
integrated database retrieval system
