Apostichopus japonicus (Japanese sea cucumber): 139979048
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Entry
139979048 CDS
T10891
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139979048
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139979048
Spliceosome [BR:
ajj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139979048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
Ank
HA2_N
Ank_5
AAA_19
ATPase
nSTAND3
AAA_22
Ank_3
Ank_4
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
139979048
NCBI-ProteinID:
XP_071845787
LinkDB
All DBs
Position
13:11468357..11574952
Genome browser
AA seq
1433 aa
AA seq
DB search
MGKKAGRVVVDEDFKIGVDALVKNFRYDETKRELEFPSSLDSTQRKYIHQLVAQLGLKSK
SKGSGLNRYLTLFKKDGTSLADKIPICHLTQVSRNELQALFQRLPVSVRERQELLPRMER
RRLGPNDRRPQTSRKQDAQNSGNPAREMAKTTGRLNSGLPQTPPARRKSDLDEFRKSLPI
FAMKDEIIRLITNNRVTIISGETGSGKTTQVPQFILDASYKLGSACRIICTQPRRLSALS
ISGRVAAERGESVGQTVGYQIRLESRVSPKTLLTFCTNGVLLRTLMSGDTSLSSISHVIV
DEIHERDQYSDFLLIQLRELLSKHPHLHVILMSAALDIELFVRYFNNAPLLCVPGKLFDV
EELFLEDALRCTGYTTKLMDQYKKDKAKKQGQQAELEKWKKKKGSGNPQGAASSPFDMTS
LQGALKSPGSSSQAKQGTLDTSLDVSDMPDWLVEEMDSALSEAWKVGTEETFLQMLILIM
NENVSVNFQHSQTSVTPLMVAAAKGNTDTVEKLLTLGANVHLKAGGDQTALDLAKHSGNN
DLVSYLQAYITNLDQQNEPDAALVSGASLISVEDKELLEAYQNTFDDDRVDIELILTLIG
YICQNSTEGAILAFLPGYDEIVTLRDTLMNNDRFGDTSLFRIYTLHSSMQSNDQVKVFKT
IQGIRKIVLSTNIAESSITINDVVFVIDSGKVKEKTFDALTSVSMLKSVWVSKANSKQRR
GRAGRCRPGMCFHMFSRARYQSLPDFQTPAILRMPLHELCLHTKLLAPVTCTVSEFLARA
PQPPASLAVRNAIQLLQSIDAMDHWEDLTELGCHLADLPIAPHLGKMVLYSIVLKCLDPI
LTIACALAYKDPFILPKHPSQRRACHQVRKKYAANTFSDHMALLRAFQSWQRARSDNWEK
SFCERNFLSPASLEMIVGMRTQLLGQLRASGFVRARGPGDIKDLNTNSENWAVVKCALCA
GMYPHIIRADKQEGTLMTKQEKNLRFHPSSVLNEEANEACSLKKMQKMGVCKLPSDWFIY
EEQTRVFRSLYVRCVTLVSPITIALFCGPSCLPEDSLTLPNSAARGQAKVGPSGDGESAS
SDDDEEAGEGAMALFKLDWWLQLKMDIQAANLTVSLRQKFHTLFLRRMRAPAKPWSEADE
SVLRTLITVLTSEEQALGLQQPVGVGQRPKPMAMDNFNSPPQKSVGHRLQQGSNFRGGGW
FPRGGQMSPQGRRGGPRFSPNQGHRAPGYRPPRQGAHGRGMPRAYPPQPFNANNNNSNQE
HGFATEGFHSDSMGTDIAPPPGFQHLGTNQQWSTGGQSSTYEEHERASSPLMHTMPNPRA
RPFDPSTLWFPPGQNHHPEPLAHSTPSYQQGPSSHLSFRPEEAKPLDSVGSNDDPRWAHW
QQGNPEGHRQVRNPETRRSRISTWSSSSVNGSSETCNTPWSTAATFGDFGGRY
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaagctggtcgagtcgtcgtggatgaagacttcaagataggtgtcgatgcc
cttgtgaagaattttcgatacgatgaaaccaaaagagaattggagtttccatcttctctg
gattcgactcagagaaaatacattcatcagttagttgctcaacttggactaaagtcaaag
agtaaagggtctggactgaatcgttatcttactctgttcaagaaagatgggacatccttg
gctgataaaattccgatatgccatcttacccaagtctctaggaatgaattgcaggcatta
tttcagagattgcctgtatccgtacgggaacgtcaggaactattaccgaggatggaacgt
agacgattaggaccaaacgacaggagaccacagacctcgagaaagcaagatgctcaaaac
agtggcaatccagcccgagagatggccaaaaccacgggtaggttaaacagcggtctacca
cagactcctccagcgagaagaaagtcagacttggatgagtttcgtaaaagtcttccgata
tttgccatgaaagatgagatcatccgattgattacaaacaacagggtgacgatcatttct
ggtgagaccggatctggaaaaaccacacaggtacctcagtttatattagatgccagttac
aaactcggaagtgcttgtcggattatctgcacccaaccccggaggttatctgctctctct
atctccgggagggtggcagcagaaagaggggagtctgtcggccagacggttggttaccag
atcaggctggagagcagggtctctcccaagacactcctcacattttgtaccaatggtgtg
ctccttagaacccttatgagtggtgacacatcactgagttcaatcagccatgttattgtg
gatgagatacatgagcgggatcagtacagcgacttcctgcttattcaactcagagaactg
ttgtccaaacatccacatctacatgtgattctaatgtctgcagccctggacattgagctc
tttgtacgctacttcaataatgcaccattgctctgcgtccctggaaaattatttgacgta
gaggaactctttctagaagatgcattgaggtgcactggttatacaacaaagctgatggac
cagtacaagaaggacaaagctaagaaacaaggtcaacaagcagaactcgaaaaatggaag
aagaaaaagggaagtgggaacccccaaggagcagcgtcgtccccgtttgacatgacatca
cttcaaggagctttgaagtctcctggttcttcaagtcaagcaaaacaaggaactctcgat
acatctctggatgttagtgacatgccagattggttggtggaggaaatggactcggcttta
tcagaggcatggaaagtcggcactgaagagaccttcctacagatgctcatattaatcatg
aatgagaatgtcagtgtgaattttcaacattcccaaaccagtgtgacacctctaatggta
gcagctgccaaaggtaataccgataccgtggaaaagcttctgacattaggggccaacgta
catctgaaagccggaggcgaccagactgctctggaccttgcaaagcattctgggaataat
gacttggtttcatatctccaagcttacataaccaaccttgaccaacaaaatgagccagac
gcagcgttggtaagcggtgccagcttaatcagcgttgaagacaaagaactccttgaagcc
tatcagaatacctttgatgatgacagagttgatattgagctaatattgactctgattggc
tatatttgtcaaaattctactgaaggtgcaattttggccttccttcctggttacgatgag
attgtgactttgagagacactttgatgaacaacgatagatttggtgacactagcctgttc
cgaatctacacgttgcattcatccatgcagagcaacgaccaggtcaaagttttcaaaacc
atccaaggaattcgaaagatcgtattgtccaccaacatagcggagtccagtataaccatc
aatgatgtggtgtttgtcattgactcagggaaagtcaaggagaaaacatttgacgcgcta
acatctgtgtcgatgctgaagagcgtctgggtatccaaggccaattctaaacaaagaaga
ggaagggcagggagatgtaggcccggaatgtgcttccacatgttcagcagagccagatac
caaagtcttccagatttccagaccccggcaattctacggatgccactacatgagttgtgt
ttacacaccaaactgctagctcctgtcacctgtactgtctcagagttcttggccagggct
ccccagccaccagcttcactcgctgtaagaaatgccatccagctactacagtcaattgat
gccatggaccattgggaagacctaactgagctcggctgtcacctggcagacctcccaatt
gcacctcacctcggcaaaatggtcctctattcaattgttctgaaatgtctggatcctatt
cttaccattgcatgtgccctggcatacaaagacccctttattctacccaagcatccatct
caacgaagagcttgtcatcaggttaggaagaaatatgccgcaaacaccttcagtgatcat
atggctttacttcgagccttccagtcatggcaaagggcaagatctgacaactgggaaaag
tctttctgtgagcgaaatttcttgtcgccagcatctctggaaatgatcgttgggatgagg
actcagctccttggacagctgagggcttcaggatttgtcagagcaagaggtccaggcgac
atcaaggacctgaatacgaattcagaaaactgggcggttgtgaagtgtgctctatgtgcc
ggcatgtacccgcacatcataagagctgataaacaggagggaacattgatgacaaagcaa
gagaagaatcttcgattccatccttcttctgtcctcaacgaagaagcgaatgaggcttgc
tccttgaaaaagatgcagaagatgggagtctgcaagctcccatcggactggttcatctac
gaggaacaaactagagtatttcgatcactctacgtacgttgcgtgaccctggtctctccg
attaccatcgcccttttctgtggaccatcctgcctcccagaggattccctcactctaccc
aactctgctgcgagaggccaagcgaaagtgggccctagcggggatggcgagagtgcatcg
agtgatgatgatgaagaggctggagaaggggccatggcccttttcaaactggactggtgg
ctgcaactgaaaatggacattcaggctgcaaatttgacagtgagtctccgacagaaattc
cacacgctctttcttcgtagaatgcgggcaccggccaaaccttggtctgaagcagatgag
tctgttctgagaactctcatcactgttcttaccagcgaggaacaagctcttggactacag
cagccagttggtgttggacagagacctaaaccaatggctatggataacttcaacagccca
ccacagaagtcagtcggtcatcgactgcagcagggaagtaattttagaggtgggggctgg
tttcctagggggggacaaatgtccccacaaggcagaagaggaggaccacgtttcagtccg
aaccaaggtcaccgagcccctggttaccgacctccccgtcagggtgcccatggacggggt
atgccgagggcttacccgccacagccatttaacgccaataataacaactccaaccaggaa
catggattcgctacagagggctttcattctgactctatgggtactgacattgcccctccc
ccaggctttcaacatctcggtaccaaccagcaatggtcaactggaggtcaaagttcaacc
tatgaggaacatgagagagcttcttcacctttgatgcataccatgccaaaccccagagct
cggccgtttgatccatccacactgtggtttccgccgggccagaatcatcatcccgaaccc
ttggcccactccacgccctcataccaacagggtccctctagccacctcagtttcagacca
gaggaggcaaagccactggattcagtgggtagcaacgacgaccctcggtgggcgcactgg
caacaggggaaccccgaggggcacagacaagtcagaaatcctgagacaaggagatctagg
atttctacttggagtagttcctccgtgaatggatcctctgaaacttgcaacacaccttgg
agcaccgcagcaacctttggagactttggtggacgttactaa
DBGET
integrated database retrieval system
