Apostichopus japonicus (Japanese sea cucumber): 139979155
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Entry
139979155 CDS
T10891
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03013
Nucleocytoplasmic transport
ajj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139979155
03015 mRNA surveillance pathway
139979155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139979155
Enzymes [BR:
ajj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139979155
5.6.2.5 RNA 5'-3' helicase
139979155
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139979155
mRNA cycle factors
Common to processing body (P body) and stress granule
139979155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
AAA_16
NAT10_TcmA_helicase
DEAD
nSTAND3
UvrD-helicase
SLFN-g3_helicase
SRP54
ATPase
DUF5343
NACHT
AAA_22
AAA_25
DUF269
Motif
Other DBs
NCBI-GeneID:
139979155
NCBI-ProteinID:
XP_071845963
LinkDB
All DBs
Position
13:10852579..10902010
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVDAYGPSTQSLTFYDTDQDLIAGIGADTQGSEYDFNFTMPSQTQASQSQASQLDIASQ
SQPEPDDSKPEENGIGEVGVDGQKDGQKELTFEEDDEEEAFYSKDLPEYACRYCGIHDPA
AVVLCNSTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHKDSPLGETVLECYNCGNRNVF
LLGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPTQWQPLIQDRTFLRWLVKIPSDEEQL
RGRQISAVQISRLEELWKENPEATLEDLEKPGMDEEPASVMLRYEDAYMYQNIFGPLVKM
EADYDRKLKETQTTSKISVRWDVGLNRKTRAYFDFPKKEDLKLMHGDELRIRYQFPDSRE
PWSGVGHVIKIPDNYSDELCIELKSNAGVPSQHTQDFVVEFVWKSTSFDRMQSALKTLAV
DETAVSTYLYHRMLGHELENMVLKCNLPKRNSAPGLPELNHSQVSAVRNVLARPLSLIQG
PPGTGKTVTSASIVYHLAKQGLGQVLVCAPSNIAVDQLTEKIHRTGLKVVRICAKSREAI
DSPVGFLALHNQIRNMDGAEELKKLQALKDEIGELSSSDEKRYRSLKRNCERELLQNADV
ICCTCVGAGDPRLARFRFRAVLIDESTQATEPECLIPVVLGCKQLILVGDHCQLGPVVMC
KKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAAERTN
LALDFPFPQADKPMFFYATTGQEEISSSGTSYLNRTEASNVEKLTTSFLRGGIKPEQIGI
ITPYEGQRAFIVTYMQYSGPLNVKLYQEVEIASVDAFQGREKDYIILSCVRANDHQGIGF
LNDPRRLNVALTRCRFGVIIVGNPKVLSRHPLWNHLLTYYKEQQVLVEGPLNNLKESLIQ
FSKPRKLVNPSNPGGRFMTTAMFSAREAMIPGGMYDRSRGMVNGGGPSPYLSGPGRIHDQ
LSYIQPDQPHFTGVNLPMPVNMFMPPPPPPHQPQMGLGYFNSNPVQSVPGNLNRGRGAGP
KRRGRGGSRPHQASQYNLSLQSQPSQDASQSLSQGVLTQGNMSMSQPMSQPGLSQPSLSQ
MGLSQPGLSQPELSQDSYMGDEFKSQLDAALSQDSTYQGDRNFQAGIGY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtacggtccgagcacccagagtcttactttttatgatacagatcaa
gaccttatcgccggtattggggcagatacccaagggagtgaatatgactttaattttacc
atgccatctcaaactcaggcttctcagagccaggcctctcagttagatatcgcatcacaa
agtcaaccagagccggatgactctaagccagaggagaatggtatcggagaggtaggcgtg
gatgggcagaaagatggacaaaaggaacttacctttgaggaagacgatgaggaagaagcc
ttctactctaaggatctccccgagtatgcttgcagatactgtggcatccatgatcccgct
gctgtggtactttgtaacagcaccaaaaagtggttctgcaatggtagaggcaatacttct
ggcagccacataatcaaccacctggtcagggccaaatgcaaagaggtgacacttcataag
gacagtcctttgggagaaacagtcctggagtgttacaactgtgggaacaggaacgttttt
cttcttggcttcatcccagccaaggcggactccgtggtggtccttctctgtcgccaaccg
tgcgctactcagagtaatctcaaagacatgaactgggatccaacccaatggcagcccttg
atccaagacaggacgttcttacgctggctggtgaagataccgtcggacgaagaacagctc
cgcgggcgccagatctctgccgtgcagatcagccggctggaagaactatggaaggaaaac
ccagaggcaactctggaagacttggagaaacctggcatggatgaggaaccagcctcggtc
atgttacggtacgaagatgcctacatgtaccagaacatctttggccccttggtgaaaatg
gaagcagactatgatagaaaactcaaggagacccagacgacttcaaagatctcggtacga
tgggatgtcggcctcaaccgcaagaccagagcgtattttgactttccgaagaaggaggat
ctgaaactgatgcatggtgatgagcttcggattcgataccagtttccagactctcgtgaa
ccctggagtggggttggtcatgtgatcaagataccagacaactacagcgatgagttgtgt
atcgaactgaagagtaacgctggagtgcccagtcaacacacgcaggactttgtcgttgaa
tttgtgtggaagtccacatcttttgacagaatgcagagcgctctgaagacactggcagtg
gacgagacggctgtctctacctacctctaccaccgtatgctcggacacgaactagagaac
atggtcctcaagtgtaacctgccaaagcgcaactccgcacctggattacccgaactgaat
cactctcaagtatccgctgtgagaaacgtcctcgctcgacctctgagcctcatccaggga
cctcctggaacaggcaagactgttacctctgcctccattgtttaccacttggccaagcag
ggtctggggcaagtactggtgtgcgcccctagcaacattgctgtcgatcagctgacagag
aagatccatcgaaccggtcttaaggttgttcgaatctgtgctaagagtagggaggccatc
gattcacctgttgggttcctggccctgcacaaccagatccgtaacatggacggggcggaa
gaactcaagaagctgcaggctctcaaagatgagatcggcgagctctccagtagcgacgag
aagaggtacaggtccctgaagaggaactgcgaacgtgagcttctgcagaatgctgatgtc
atctgctgtacctgcgtgggtgccggtgacccacggctggcgcggttcagattcagggct
gtcctgattgatgagagcacccaagctaccgaaccagagtgcctgataccggtagtccta
ggctgcaaacagctgatcttggtgggagaccactgtcagctgggacctgtggtgatgtgc
aagaaagccgcaaatgccgggctctcgcagtccctctttgagaggctggtggtcttgggc
atccgaccaatcaggcttcaagtacagtatcgtatgcacccgtcgctcagtgcattcccg
tcgaacatcttctacgagggatcactccaaaatggagtcaccgctgcggagcgtacaaac
ctggcactggatttcccgtttcctcaagcggacaaaccgatgtttttctacgctacgacc
ggccaggaagaaatatccagctctggcacatcttacttgaatcgaacggaggcatctaac
gtcgagaagctgaccacatcgttcctccgtggcgggatcaagccggagcagatcggcatc
atcactccgtacgaaggtcagagggcgttcatcgtgacctacatgcagtacagcgggccg
ctcaacgtgaagctctaccaggaggtggagatcgccagcgtggatgcattccagggtcgt
gagaaggactacatcatcttgtcctgcgtcagagctaacgaccaccaaggaatcggtttc
ctcaacgatccccgccgtctgaacgtggctctgactcgttgcaggtttggtgtgatcatc
gtgggcaatcctaaggtcctctctcgacaccctctgtggaaccacctgctgacctactac
aaggagcagcaagtcttggtagaaggccccctaaacaacctcaaggagagcctcatccag
tttagcaagcccaggaagctggtgaacccctcaaacccgggtggacgtttcatgaccact
gccatgttcagcgcccgtgaagccatgatacccggcggcatgtacgacagatcccgagga
atggtgaacggaggtggaccatcaccgtacctctctggaccaggacgcatccatgaccag
ctgagctacattcagcctgaccagcctcatttcactggagtgaatctgccaatgcctgtt
aacatgtttatgcctccaccaccaccaccacaccaacctcagatgggcctggggtacttc
aacagtaacccggtgcaatctgtgccgggcaacctgaatcgtggtaggggtgctggcccc
aagagaagggggaggggtggcagcagacctcaccaagcctctcagtacaacctttcactg
cagagccagcctagccaggatgcatctcagtctctgtcccagggtgtcctgacccagggc
aacatgtcgatgagccagcccatgagccagccagggttatcacaacctagcctgtcacag
atgggcctgtcccaaccgggcctctctcaaccagagctctctcaggacagttatatggga
gacgagttcaaatcccagctggatgcggccctctcccaggattctacctaccaaggggat
cgaaactttcaagcgggaatcggttactag
DBGET
integrated database retrieval system
