Apostichopus japonicus (Japanese sea cucumber): 139979504
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Entry
139979504 CDS
T10891
Name
(RefSeq) DNA repair protein RAD50.L-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03440
Homologous recombination
ajj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139979504
03450 Non-homologous end-joining
139979504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajj03032
]
139979504
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139979504
DNA replication proteins [BR:
ajj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139979504
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139979504
BRCA1-C complex
139979504
NHEJ (non-homologous end-joining)
MRX complex
139979504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
Lebercilin
AAA_29
AAA_16
AAA_13
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139979504
NCBI-ProteinID:
XP_071846470
LinkDB
All DBs
Position
14:15956369..15987491
Genome browser
AA seq
1310 aa
AA seq
DB search
MSVLDKLSIQGIRSFGHEDADKQVVEFFQPLTLIVGQNGAGKTSIIECLRYVTSGDQPPG
AKSCFVHDPKVAHETEVKGQVKLKFKDKLGENVVVTRNLMATQKAKRTEFKTLEGTIRRV
TKLGDSKSISSRCAEIDREMVESLGVSKPVLVNVIFCHQEEANWPLSEGKQLKTKFDEIF
AATRYIKAVDNIKKIRQEQQSNIKELTIESKYLREDKEKATQLEKDLENQQIRLMAAKDL
AAKIDSQRAPLRARVEEIENREQEVQKMDNEIGKLTAGKEQMLLSCREIEDGLESIFDGP
LVELKRTYKDHQKETENRKTTLNEKEREHTESSRTLARLRDERSKRLTHHGKLEQEAEHC
KGLQQRQKECVMKMAESMNIPGYHRVAELSSQQLTTFKEEVKRQRTNLGDEYHQMKQTYE
DREKHVDLQSQEFRDTKSRLEQAVTMKTKQMNEYRSEIRQITDDLNQMEDNANSLRELEE
ELRKAQLEEEKVTKSVDIDELKSDIEKKQQEKKEKDAKLSDLRKEISKLSMQSGIRTKLE
MWEKDKRKKEDAIKKIRGKHEEEMTHLLGRFPSENARNKLEDFLIAKKREVRQMQEQLQA
SKMKRSSEESNQKHILKQLKEKETELRNIEEKLMLECGSQDVDKSLQNLQQSISNVQSER
GALTGSTHLYERYIRSLERTEAQCPLCHRGFDTENEVHELVQELRDKLRLAPVKMKEKEN
SLVQQREKLSKLQKLQPLKGKMAKLSDQEIPDLKTQLASITEKLEKLTNKIEEEENHLSM
LQGDETMASNLKPDINMLDQHRITLNELERQIGNLQQRISGEGRVRTIEEVNNEHGEFEI
QVNALNSALELKQRQRDDYMENVQILRGTINSISSEKLRLAGRLQQQDKLETKKTELVTN
SKKLQRDIESHKEEIEPLKTKLKKLEHDKRDLVTKKETALDKLQTELKTIVDKMQEIDRY
SEEINRYLSSGKPDMLRTMASNLEELRGKTSKAEEEESKLKQLIDQLTKDIVKEEIQERD
LYDNIQLRKKQAEIKEVDAKLAELQQQRGGLDSTGLLREKHKLNSELSKLFKEKNQAGGR
ESILKEEVRKVEAEVNSEKYRTAKDKFNNVMIKLKTVEVANKDLDKYSKALDTAIMRYHK
MKMEEINKVIKEYWRMTYKGNDIDYIEIQSEADSSSSVTTRKSYNYRVVMVKGDTEMDMR
GRCSAGQKVLASLIVRLALAETFCLTCGILALDEPTTNLDRVNIEGLAYALVDIIKSREN
QRNFQLIVITHDEDFVELLGRSDYADYFYRVSKNNEAKSVIMKKDIAALT
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtccttgataaactgagcattcagggaattcgtagttttggtcatgaagatgct
gacaaacaggttgttgaatttttccagccattgaccctgattgtcggacaaaatggtgca
ggcaaaacaagtattattgaatgtttgcggtatgtcacatccggtgaccagcctcctgga
gcaaagagttgctttgtgcatgatccaaaggtggctcatgagaccgaggtcaaaggtcaa
gtgaaactgaaattcaaagataaacttggagagaatgtcgttgtcacaagaaatctcatg
gctacgcagaaggcaaaaagaacagagtttaaaactttggaaggcacaatacgaagagta
accaaactgggtgattctaagagcataagttccagatgtgctgaaatagacagagagatg
gttgaatcgcttggcgtttccaaacctgttcttgtcaatgtcatattttgccatcaagag
gaggcaaattggccgttgagcgaggggaaacaattgaagacaaagtttgacgaaatcttc
gctgcaaccaggtacatcaaagctgtggacaacattaagaaaatcagacaagaacagcaa
agtaacatcaaggagcttacgatcgagtcaaaatatttgagggaagataaagaaaaagca
acacagttggagaaggatctcgagaaccaacaaatccgactaatggctgctaaagactta
gctgcaaagattgacagtcaaagggctcctcttcgggcaagagtagaagaaatcgagaac
agggaacaagaggttcaaaaaatggataatgaaatagggaaactcacagcaggcaaggag
cagatgttgctgtcctgcagggagatagaagatggcctggaaagcatctttgatggccca
ttggtggagctaaagagaacatacaaagatcatcaaaaggaaacagaaaacaggaaaaca
actttgaatgagaaagaaagagaacatacggaatcaagtaggactttggcgagactgcgt
gatgagaggtccaaacgactgactcatcatggcaagttggagcaggaggcggagcattgc
aaagggttacagcaaagacagaaggaatgcgtcatgaagatggcagaatcgatgaacata
ccaggataccatcgcgtagcagaattatcctcccaacaattgaccacatttaaggaagaa
gttaaaaggcagcgtacaaatttgggagacgaatatcatcaaatgaagcaaacctatgaa
gacagggaaaaacatgttgatctacagagccaggaattcagggacaccaagagtagactt
gagcaagcagtaaccatgaaaaccaaacagatgaatgaatacagatcggagatccgacaa
atcacagatgacttaaatcagatggaagacaacgctaacagtctccgagagttggaagag
gaactcaggaaagcgcaactagaagaagagaaagtgacaaaaagtgtcgatatcgatgaa
ctgaagagcgatatcgagaagaaacaacaggaaaagaaagagaaggatgccaagctcagc
gacctaaggaaagaaatctccaaattatctatgcagtcaggaatccgcaccaaactggaa
atgtgggaaaaagacaaacggaagaaggaagatgcaatcaagaaaatacgtggcaaacac
gaagaggagatgacgcatttacttggacgatttccatctgaaaatgcccgcaataagctg
gaggacttccttatagccaagaagagggaggtgagacaaatgcaggaacagctccaggct
tctaagatgaagcgttccagtgaggagtccaaccagaagcacatattaaagcaacttaaa
gagaaagagacagaattaagaaacattgaggagaagttaatgttggaatgtggcagtcag
gatgttgataaatccttacagaaccttcagcagagcatcagtaatgtacagagtgagaga
ggagccctgactggaagtactcatctctacgagaggtacattcgttccctcgagagaact
gaagctcaatgtccactctgtcatcgaggatttgacacagaaaacgaggtccatgaatta
gttcaggaactaagagacaaactgcgtcttgcccctgtcaaaatgaaggagaaggaaaat
agcttggtccaacaacgggagaaattatccaaactgcagaagttgcagcctctgaaaggg
aagatggcgaaattgtcagatcaagaaattcctgatttgaagactcagttggcttcaatc
acagaaaaactggaaaaactgacaaacaagattgaagaggaggaaaatcatttgagcatg
ttgcaaggagatgaaaccatggccagtaatctgaaacctgacatcaatatgttggatcag
catcgtatcacacttaatgaactagaacgacagattggaaacctgcaacagagaatctct
ggggaagggagggtcagaaccattgaggaggtgaacaacgaacacggagagtttgaaatt
caagttaatgctttaaacagtgctttggagttaaaacagcgtcagagagacgattacatg
gagaatgtacaaatacttagagggaccatcaacagcatatcatcagaaaagttgcgatta
gcaggaagactgcaacagcaggacaagctggagacaaaaaagaccgagcttgttaccaac
agcaagaagctacagagagatattgagagccataaagaagaaatcgagcctctcaagacg
aaactcaagaaactggaacatgacaagagagatcttgtaacaaagaaagaaacagctctg
gataaactgcagacagagctgaaaacgattgttgacaaaatgcaagagatagaccggtat
tctgaagaaatcaacaggtacctgtcttctggcaagcctgacatgttgaggacaatggct
tctaacttagaagaattaagagggaaaacttccaaagctgaagaagaggaatctaaatta
aaacagctgattgaccagctgaccaaagacatcgttaaggaagagatccaagagcgagat
ctttacgataacattcaactccgtaagaagcaagcagaaatcaaagaagtggatgccaag
cttgcagagttgcaacaacagcgtggtggtctcgactctactggtctgctcagagagaaa
cacaaactcaactcggagttgtcaaaattattcaaggaaaaaaaccaggccggaggaagg
gagtccatattgaaggaggaggttaggaaagtggaggcagaagtaaattctgaaaaatac
agaacggccaaagacaagtttaacaacgttatgatcaaattgaagacggtagaagttgcc
aacaaagatttggacaaatactcaaaagcgcttgatacagctatcatgagataccacaag
atgaagatggaggaaattaataaggttatcaaagagtactggagaatgacttacaagggg
aatgacattgattacatcgagatccagtcagaggcagattcttcatcttcagttaccaca
aggaaatcctacaattacagggttgtcatggtgaaaggggataccgagatggacatgaga
gggcgctgcagtgctggacagaaggtactcgcatctctcatcgttcgtcttgcattagcc
gagaccttctgcctcacttgtggaattttagcgttggacgagcctactacgaatctagat
cgtgtcaacattgagggattagcctacgctcttgtagacattattaaaagccgtgaaaac
cagagaaattttcagctgattgttatcacccacgacgaagactttgtggagttactcgga
cggtctgattatgctgattatttctacagagtatctaagaacaatgaggcaaagtcagtc
attatgaagaaagacattgctgcattaacgtga
DBGET
integrated database retrieval system
