Apostichopus japonicus (Japanese sea cucumber): 139979800
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Entry
139979800 CDS
T10891
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139979800
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ajj01009
]
139979800
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ajj04515
]
139979800
Protein phosphatases and associated proteins [BR:
ajj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139979800
Cell adhesion molecules [BR:
ajj04515
]
Cadherins
Protocadherins
139979800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
139979800
NCBI-ProteinID:
XP_071847016
LinkDB
All DBs
Position
14:6658717..6704171
Genome browser
AA seq
1278 aa
AA seq
DB search
MDKARYSGCLLTSVILCLFFRWTNGDLTFDLPEESPAGYLVGNVAAGMEFEGNPDIRFQF
ASILRPNETFFSLDNLLGELRTVKIIDRELQCPDQRADSYCQKTLQVLIRDGASVNVINV
YVNILDINDHTPSFSDNIINLAISESVSPGTQFPLELATDPDVGNNTIQSYRLSDDYDGL
FELLVIQFPDGTIVNVQLKVTAGLDREFRASYAFYLEASDNGVSKKVGSALLNVTVLDAN
DHSPKFLQSQYSVDIPEDWGVGNSILTVQATDDDTGSNGKVVYSFAPSVPSSARALFEID
RNSGTIKTIGKLDYESKQVFQLSIQATNDVTNPIPDFSFVTVNIIDVNDNKPVMTVTPLD
GEGRQANLSELSPPGTHVAFITVSDIDTDLNGEVSVSLLFHFDNFTLVEERPGQYFVKTV
SYLDREEISIFNITVMAQDHGNPARFTRKKLVVFVEDVNDNYPYFVSDHLHASIRENNEV
EDTVTTIVAFDDDDGMNSNIIFEMIGGEDLFFVNPITGVLRADVVFDRENISTSTFVVEA
CDQGVPVLCANTTVTVDIVDENDNSPVFVQDLYEVELSENNKVSDLIGIVEALDPDSGSN
AEISYTLKHPKFRISKFSGSIYAQEMLDYEEQRMHSFVVTATDGGSPGRTGETRVVVTLL
DENDNSPRVVFPDDRDNVRFIPLDAEPGFPVAQIESYDPDGGRNAMLSFEIESGNIFGSF
GIRSNGKVVTAKRFKDFEERVFNISIRVTDGGIQPLSKVATLHVAVADRAFNESLPPSNF
TERFNRTIFNFHLVTLPPQDKLVVADWLMVIVISLAGLAIFLLIIFLLLASSRCRKTEKP
KRQYSVPNSRDKLYVNSPARSTASDVQSKCSDIDSVQPSIATSHSSIPSKNIIKWRQQAQ
QHQAVGREGRNDLRLGNQKMSTFGSNSDINTGSTASINSRRTPDPDQEVQRLLDKLRQTT
SEITSDHSSEGDGRSSSHDSGNGGDSDRDTKDVSTSTIHGGSTTVPRGFTKQLGMPLADQ
DVSKRSTSMPMISLIGSNRKNSPDFQKGPRCTPECSSFGHSEHCWSSHNPQGVSKSKSVS
FSPYPDEYEIKDRNDNRVEDRRSTPSYGVGRSEAAVLLNRIRQSPTTSYAESTNSDPGRY
DRSYEDSRKPVNAANLSPIREHPEERRNRQRRHSNKRRTQGDRALHTRASRLTGRLGHSR
DRPEDTETFALHNRTPSTGSYEGGADSVSHSSVDSIKVRPPAPYLDVVDSDDEYSDHHVD
KRCMESTDDMDGTYRDWV
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggataaggccagatattctggatgccttttgacatcagtgatcctttgtctcttcttt
cgatggactaatggtgatttgacgtttgatcttccagaggaatcaccagcaggttactta
gtcggtaacgtcgccgctggtatggaatttgaagggaatccagacattcgttttcaattt
gcctcaattttaagaccaaacgagacatttttctcactagacaatctgttaggggagcta
aggactgtcaaaatcatagatcgtgaattacagtgtccggatcaacgagccgattcctac
tgtcaaaaaacgctacaagtcttgattcgagacggtgccagtgtcaacgtcataaacgtt
tacgtcaatatcctcgacataaatgatcacactccatcctttagcgacaacattatcaat
ctcgctatatcggagtccgtcagtccagggacccagttcccgttagaactcgccactgat
cctgacgtaggtaacaatactatccaatcttatcgattatccgacgactacgatggttta
ttcgaactactagtcattcagttcccagatggcacaatcgtcaacgttcaactaaaggta
actgctggacttgatagagaatttcgagccagttacgctttttatctagaggcatcggat
aatggggtatctaaaaaagttggatcggctttgcttaatgtcaccgtcttggatgctaac
gatcattcaccaaagtttctacagagccagtactctgtcgacattccggaggattggggt
gtcggcaactccatcttaaccgttcaagcaaccgacgatgacacggggtcgaacggaaaa
gtggtctactcgtttgctcccagcgtcccttcaagcgcaagagctctgtttgagattgat
cggaactcgggtaccatcaaaactattgggaaattggactatgaatctaagcaagtgttc
caactgagcatacaagcgaccaatgatgttaccaacccgattccagatttctctttcgtc
accgtcaacatcatcgacgtaaatgataacaagccggtaatgaccgtcactcctttagat
ggggagggacggcaagctaacctgtcggagctctctcctccaggaacacacgtagcattc
ataacggtatcagacatcgataccgacttgaacggtgaagtatccgtatcgttgctgttc
cattttgataattttactctcgtagaagagcgaccaggacagtattttgtcaaaaccgtt
tcgtacctcgaccgcgaggaaatcagtatctttaacataactgtgatggcccaagatcat
ggaaatcctgctcgattcactcgcaagaagttggtagtctttgtggaagatgtcaatgac
aattatccgtactttgtatcggatcatcttcacgcttcaattcgggaaaataatgaagtt
gaagacactgtgacaactatcgttgcctttgacgacgacgacggcatgaattcaaacatt
attttcgaaatgattggtggtgaagatctgttcttcgtcaatccgatcacaggagtgctt
agagcagacgtggtctttgatcgagaaaatatatcgacatctacgtttgtggtagaagcc
tgcgatcaaggtgtccccgtcttgtgcgccaacactaccgttacggtcgacattgttgac
gagaacgacaattctcctgtctttgtacaggatctttacgaagttgagctttcagaaaac
aataaagtcagtgacctcattggaatagttgaagcactcgacccagattccggtagcaat
gcagagatatcgtacaccctgaaacaccccaaatttcgcatttcaaaattttccggtagt
atttatgctcaagaaatgctcgattatgaagaacagcggatgcattctttcgtagtcact
gccactgacggcggcagccctggtaggaccggagagacccgtgtcgtagtgacgctgttg
gatgaaaatgataactcgcctcgcgtcgtctttccagacgatagggacaacgtacgattt
atcccacttgatgcagagccgggatttcccgtcgctcagattgaaagctacgacccagat
ggcggacgaaatgctatgttatcattcgaaatcgaaagtggcaacatatttggttcattt
gggatccgatcgaatggaaaagtagtaacagctaagcgctttaaagattttgaagagcgg
gttttcaatatttctatcagagtgaccgatggtggaatacaaccactatcaaaagttgct
actctgcatgtcgcagtcgctgatcgagcattcaacgaatctctgccgccatcgaatttc
acggaacgattcaatcgaaccatctttaattttcacttagtcacgttacctccacaagat
aaactagtagtggctgattggttgatggtgatagtcatttcgttagcagggctggcaatc
ttccttttaatcattttccttctgttagcatccagtcggtgtcgaaagacagaaaagcct
aaacgtcagtattcagtccccaacagtcgggacaaactgtacgtcaatagccccgctcga
agcaccgcttccgatgttcaatccaaatgttccgatatcgattcggtgcaaccatcaatt
gctacctctcattcatcgataccatcaaaaaatattataaagtggcgacaacaggctcaa
caacaccaagctgttggaagagaaggccgtaacgatctacgtctcgggaatcagaagatg
tcaacattcgggagtaactcggatattaacaccggtagcactgcatcgatcaattctagg
aggaccccggatccagatcaagaagtacaacgacttcttgacaagcttcgtcagaccacc
tccgagattacgagtgatcattcatcggaaggtgacggtagaagcagcagtcacgatagc
ggaaacggcggtgacagtgatcgcgatactaaagatgtatcaacatctacgatacacggt
ggttcaacgacagtgccaaggggattcactaaacagcttggcatgccactcgctgatcag
gatgtctccaagaggtccacctctatgccaatgatttctttaataggatccaatagaaaa
aattctcctgactttcagaaaggaccaaggtgtacccctgaatgtagctcatttggtcac
agtgaacattgttggtcatctcacaatccccaaggtgtgtccaagtctaagtcggtatct
ttctcaccgtatccagatgagtacgagatcaaagatagaaatgacaaccgcgtggaagat
agaaggtcaaccccgagttacggcgtcggtcgatcggaagctgcagtattactcaacagg
atcaggcagtcgccgacgacctcctatgctgagtcgacaaatagcgaccctgggcgatat
gatcggtcgtacgaagactctagaaagccagtcaatgcagctaatctgtctccaattcga
gaacatccggaagaaaggagaaacagacaaagacgacattcaaataagagaaggactcaa
ggggatagagcgttacatacacgggcgtctagactaacaggacgtttaggtcatagtcgg
gaccgacccgaggacacagagacattcgcactacataacaggacgccctctactggtagt
tatgaaggtggggccgattcggtttcacattcgtcggtcgattcgatcaaagtgcgccct
cccgcgccttacctcgacgtcgtcgattcagacgatgaatattcagatcaccacgtcgat
aaacgctgcatggaaagtacggacgacatggacggaacgtatagggattgggtatga
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