KEGG   Apostichopus japonicus (Japanese sea cucumber): 139980886
Entry
139980886         CDS       T10891                                 
Name
(RefSeq) general transcription factor IIH subunit 3-like
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
ajj  Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03022  Basal transcription factors
ajj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ajj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    139980886
  09124 Replication and repair
   03420 Nucleotide excision repair
    139980886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ajj03021]
    139980886
   03400 DNA repair and recombination proteins [BR:ajj03400]
    139980886
Transcription machinery [BR:ajj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     139980886
DNA repair and recombination proteins [BR:ajj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     139980886
SSDB
Motif
Pfam: Tfb4 T3SS_needle_F Ssl1 Ala_racemase_C
Other DBs
NCBI-GeneID: 139980886
NCBI-ProteinID: XP_071848989
LinkDB
Position
15:complement(19032170..19044888)
AA seq 302 aa
MATEETGGLLVVVVDVNPVWWGSSKRKEKTSSTLPQCMEQIMVFVNAHQMASPQNKVAVI
GSHANESRYLYPRKGSADIHQTEVLAQIKSKDGKYEQFAKVQSDVMKELKDLIARNPVVS
HTDTLLSGSLAMALCYIKRMEKEAGVGQNLHSRILVIKAAEDSASQYMNFMNVTFTAQKQ
NVTIDACILSADSGLLQQACDITGGIYIKIPDIEGLLQYLLWVFLPPPSLRSNLILPPPI
QVDYRAACFCHRMLISIGYVCSVCLSIFCAYSPICSTCHTAFKIKAAPLKLKKKKKSQAS
GI
NT seq 909 nt   +upstreamnt  +downstreamnt
atggcaacagaagaaacaggcggtctcttagtggtggttgttgatgtcaatccagtatgg
tggggatcttcaaaaagaaaagaaaagaccagttcaacattgccacaatgtatggaacag
attatggtctttgtgaatgcgcaccagatggccagcccacagaataaggttgctgttatt
ggtagtcatgctaatgaaagtcgctacctttacccgcgtaaaggcagcgcagacattcat
caaacagaagttttagcgcagattaaatctaaggatggaaaatacgaacagtttgcaaag
gtgcagtcggatgttatgaaagagttaaaggatctcatcgcacgtaatccggtggtgtcc
cacacagatactctcctctctggttcactagcaatggccctttgctatatcaaacgaatg
gagaaggaggctggagtcggtcagaatcttcattccaggattttagtgatcaaagcagca
gaagacagcgcctcccagtacatgaactttatgaatgtcacatttacagctcaaaagcag
aatgtcaccatcgatgcttgtatactgagtgcggactctggcttgttacaacaggcgtgt
gacattactggcggtatatatataaagattcctgacattgaagggcttcttcagtactta
ttgtgggttttcctgcctccgccttccttacggtcaaatttgattcttcctccgcctatc
caagtagattaccgagctgcttgtttctgtcatcggatgttaatcagcatcggctacgtc
tgttccgtttgcctctcaatattctgtgcgtatagtccgatctgctctacatgccatact
gcatttaaaataaaagctgctcctctgaagttaaagaagaagaaaaaatcccaggcaagt
ggcatctga

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