Apostichopus japonicus (Japanese sea cucumber): 139981367
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Entry
139981367 CDS
T10891
Name
(RefSeq) THO complex subunit 5-like
KO
K13174
THO complex subunit 5
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03013
Nucleocytoplasmic transport
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139981367
09122 Translation
03013 Nucleocytoplasmic transport
139981367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139981367
03041 Spliceosome [BR:
ajj03041
]
139981367
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
139981367
Spliceosome [BR:
ajj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139981367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
POT1_C_insert
BLOC1_2
Motif
Other DBs
NCBI-GeneID:
139981367
NCBI-ProteinID:
XP_071849809
LinkDB
All DBs
Position
15:19210416..19225364
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AA seq
699 aa
AA seq
DB search
MSTKIQLSSKKRRVVSKSGESSTSSSSSPRQSKRTKTSSERVVEIKPKASYDEERETETQ
TINDDLQLNKETCAKIQSLFKEIKTLKESGRSENAATIAEKRAAASVLFVTLKKMNRLSQ
LRCKKARDMTQTTKQKVDGLHLQLQNLLYEVMHLQKEIKKCLEFESSDEKIELVDVATFY
REAPLDISMPSVTEKDPHKQRLARLDWELEQRKRLSEKYDASESNRDLVAREIKSKQEYL
ESLQPRLKSILESTVPVQEYLSMPYDQIRTQHQMARLLPRPLYILFVQSSAYSEACDGDL
TVKIEGDSDTASASMSTSVAIEEDSDSDNEENLTESKRRRKTVGDKLEEKRKKVLAKHPL
QVVMQLTFKGEAQLVLTFSYLIELQVVTVVTELKDSSAAKALQSDLLSPKTILNALYPGD
DGAESPNPSNIFQLQRIGIDSWSTFSESVGSPYLWCQWLSGLDFLQCDDTKGMKPNTCLS
SSHMEATVKALKGRIKARLALQKQVTLVGQGNIPVPSSTVKLFPSKLSSRVVSWKPITEE
AMMELDFVLTHPLSENIDSSSFFYSFSCERKSAKVQGVVVLKEAYPITPPIFLIKLIWQN
KTHMAASDHDILDMEAEVNLHSQELITAKTCEYLLSCQLQRLLQCLDVYLEAASAEEASR
SPGTQVEFPKEKMFVRNTRGRSRSKPYKYSPQHGYFSQR
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgaaaattcaactttcttcaaagaagcgccgagtagttagtaagtctggtgaa
tcatccacatcttcttcttcttccccacgtcaatcaaagagaacgaagacatcatcagaa
agagtcgtagaaattaagccaaaggcttcatatgatgaagaaagagaaacagaaacccag
actataaatgacgatctccagctgaataaggaaacttgtgccaagattcagtcattgttt
aaagaaattaaaacactgaaagaatcgggaagaagtgagaatgcggctaccattgcagag
aagcgtgccgcagcatcggtgttgttcgtcactctgaagaagatgaatcgtctttcccaa
ctacgctgcaagaaagctcgtgatatgactcagactacaaagcagaaagtggacggactt
cacctgcagctacagaatctactctatgaagtcatgcatctacagaaagaaatcaagaaa
tgcttagaatttgagtcaagtgatgaaaaaattgagctagtggacgtggctaccttttac
agagaggctcctttggatatttctatgcctagcgtgactgaaaaagaccctcacaagcag
aggttagccagactggattgggaactagagcaaaggaaacggttgtcggagaagtatgat
gcaagtgaaagtaacagggacttagttgccagagaaatcaaatccaaacaggaatacctg
gagagcttacaaccgagactcaagagcattctggagtctactgtcccggttcaggaatat
ctctcgatgccctacgatcagatcagaacccaacaccagatggcccgactcctccctcgg
cctctctatatactctttgttcaatctagtgcctatagtgaagcttgtgatggagatctt
acagtgaagatagaaggagattcagacacagcctctgcctctatgtcgacctccgtagcg
atagaggaggacagtgactcggacaatgaagaaaatctgaccgaatcgaagaggagaaga
aaaactgtcggtgataagttggaggaaaaaagaaagaaagtcctggctaaacatcccctt
caagttgtgatgcaacttacatttaaaggtgaagcccagcttgttttgacatttagctat
ctgatagagctgcaagttgttaccgtggtaacagaactaaaggattcttcggcagccaaa
gctttacaaagtgacttgctgtctcctaagaccatcctcaacgctctctatcctggagat
gacggagctgaatctccaaacccttccaacatattccaactacaaaggattggcattgat
tcttggagtaccttctcagagtcggtggggagtccctatctatggtgccagtggttgtct
ggtctcgactttctccaatgcgacgacactaaaggaatgaaacctaacacatgcctcagt
tccagtcacatggaagctactgtcaaggcccttaaaggacgaatcaaagctaggctagct
ctccagaagcaagtcactctagttggtcagggcaacataccagtaccatcttcaactgtc
aaattgttcccctccaagctatcatccagagttgtttcttggaagcctatcacagaggaa
gccatgatggaactggactttgtgttgacacatccgttgagtgaaaacatcgattccagc
tcattcttctattcattctcttgtgaaagaaaatccgctaaagtgcaaggagtggttgtc
ttaaaggaggcctacccgatcactcctccgatatttctcattaaactcatctggcagaat
aagacccacatggcagcatctgaccacgacatcttggatatggaggcagaagttaattta
cacagccaggagttgattactgccaagacctgtgagtacctgctcagctgtcagttacag
aggctgctacagtgtctggacgtgtacctggaggccgcatcagcggaagaagccagccgc
tcaccgggaacacaggtggaatttccaaaggagaagatgtttgtgagaaatacacggggt
cgtagtcgaagcaagccttacaagtacagccctcagcatggatatttttcacaaagataa
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