Apostichopus japonicus (Japanese sea cucumber): 139981616
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Entry
139981616 CDS
T10891
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139981616
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
139981616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Spt20_SEP
Motif
Other DBs
NCBI-GeneID:
139981616
NCBI-ProteinID:
XP_071850236
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All DBs
Position
15:complement(11727723..11821893)
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AA seq
2223 aa
AA seq
DB search
MSGANSAANGASLEDCYTNLFALADLSGIKWKAYIAVDRPVPVGPLEDPVLSTYSKCLQS
NILSVWRRVRHEDLNILDNSRPDGPPQWAKELWIFWYGEDPKFGELITYPELKEQCQGVW
ENSLSYECRTLLFKSLHNLIERRLLTQNYVRLGKWFVKPYPELPVNGENYSDHLSFKLSF
FLHGESTVCSSVDVSQHPPVTKLTPEHLEATANGYSNGFQVILAPYGLNAVLYGQNYKGN
SEQNQKAWQVLLEWSHFYPIKNPQSSTLFGAESEDVEGTMPPAVEVFVGGVRMLYPSCYV
FVVQDDMSNVLMQQQQQQQQQQQQQQQQQQQQHHNPTSAVSPMPMAPSLNVLSPMPMAAT
PGQSYPNTAQGNTSVCSAPSSPQDAVYPIGESSTHYPQRTMVDACVGTAGDMDGGSFTHQ
LTQKVWKEWLAETDKSPIFRTNASKSTAPDTPGSETTDIHKPVNHEEGAGPSAGSSEAKE
SNQAPPMWSFSDPTVKADCKCHRQKFLKSKQSVPFGKTPPGPGNSHMSSGLGSNSLGPSS
KHKADNRTEKTVKNSKSTIPFHIRTSMMEDYCMYDNADISNERIPVSASVATPGTPGVST
SMNGVLQDMKGGSGTLTRFPQPSPMQRTPGSAEPPQANESPPSNAPSPLNPPPNGILGNP
MDQPMPTLSPNPPPRSSSDSLGGIGSIASFRAELNGIIDLAKSDPSPKQPLVGELSVPKE
EEEEDVWSCFELPSVEGDGNSKRPRLPSMPHSQEDLQDGNLENLYEHDNSGERFSQPHKR
LRQERRTRSCLDSNVFSLQNDVDTLQRVKTPDFDPYEFMDTSPTEGGSSSTRSKGKDGKG
KQRGLQQRRNSIKKGKKQEEEAQRKAEGEKARQEAMTPMNVSYPNEPFKMGDFGVPLLPR
PESSSLTTEKDLQITLNDFESLFESSDEDDDRVPLTNVSSDFPCGPNSEENLSTRTLFGS
SISSSSMSGPLTGGDLGRMYPTPPSEEQTHFSPVNHPCPELSSNLTSYGSNQTRDMTSGP
MNEQFEIEIEESLCSPRPEPLLDWTYVYKVPAVEKIVGATMYAPLKSLPSSRCPPLKVPE
YCIYKPSWQLPLSPKPELIPLIKESTIPMVPSVEMDLPASNQPSGLTPSAGIMASPAMYP
GSQEPRSAANPDPSPAASEASSFRNLNSIEQPSSAAICPESHSLYTVLALSDSQLNIFKD
CNFDSAVICACNMDIKGSDLADVGVYFTQCNCGFSAVMNRRYAVGSGLFSEDESEITGQR
TDAPLWAYHRDNPYLTEIFNQKQLLPRLQSFVKDGVEELHRTSKIVLKLIQDQCHSPYSS
LQSLLSVIRERTEYQYGQIARSNLEYLDACDACVSAIDDGRHLSESAGRGAWDPQYLRHR
CLHTWAYNPGYVRIPLSSQDIVQVLRSLQPLLHDAIQKKRTKRLWERPYAVQGPLTWQVF
FNIAIQDASESPEPLPVPPLLVGYEKDWMSSSPYAVLYWEKLLLEPFSSSRDIAYIALVP
DQEFICKRAKTFFKELTSVYESCNLGRHVPMAKSMRNGILRIGQKYASKVESEQVDSWFS
DINELPEAAKIKVFAQVCKAYVAPYLMKDPPDASMFTSQPAKMDRAYAAHSTVPVSTSAM
TGYPAGGVPNGSAEFAAKGAMAAPTSKGVTTSDSTKTESKDDSSPEIAAHADFVQPPGVV
IYVVDPFTCKEDEHPDYAGITTLGLLRCFAEIVECLPENLVKNIAFQIIPLHQVLQVANS
GTGQRQLSQLKSLAFSVFSQCHQTVNPSLPGRSLTGFGPAAELDKVIKAKESRSIHPNQV
YSPPYILAPLKDKQTELGESFGDLREACGELFCTYCLSHDQRFLLTACTDNKGELNETAI
INIDIPNSKRRKKVSVNNRALLKLWEFLLGVISKSALPWRLVIGRFGRLGQGEVRDWSAL
LSRRSLTMQSLKLKELCGMCSVPGSSEYPCILSACLVSLEPETGLRIMADSVAADKCSKS
SQRDQPSCQLHTPDDATCTHIMVFPTSATKQDASATYQSEPIMDLTFPNPVDNVPLGDDL
FNDSDIVRSLFENPIMDDVRSPTQLDHPQGSPSLLPAMNSIGIDSGIKNSSGLPENVLPV
DAENVLQQPLALGYFVSTAKAGNLPKWFWSSCPEAETNCPVFLKAALHVNNGAVQQTSDD
IYQKPHTHSLDSNKTTDVLRYVLETYNGLSWLTVDPATGDRRSCLPIHMVVLMQLYNTAA
ALL
NT seq
6672 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaaattcggcggcgaatggtgccagtttggaggattgctacacaaattta
ttcgccttagctgatcttagtggcattaagtggaaagcctacattgcagttgaccgtcct
gtgccggtagggcccctcgaagaccctgttctcagcacctactcgaaatgcctccagtcc
aacattctcagcgtgtggcgccgagtccgccatgaggacctcaatatcttggacaacagc
aggccggatggaccaccccagtgggcgaaagagctttggatcttttggtacggagaagat
cccaagtttggcgagttgattacataccccgaactaaaagagcaatgccaaggtgtctgg
gagaacagcttgtcatacgaatgcagaacattactcttcaagtctcttcacaatctcata
gaaagacgtttgcttactcaaaactatgtgaggctgggaaaatggtttgtgaaaccctac
ccagaattgccggttaatggtgaaaattacagtgaccacctgtccttcaagttatcattt
ttcttacacggggagagcaccgtctgttcgagtgtcgacgtcagccaacatccgccagtg
acgaaacttaccccagagcatctggaagccactgcgaatggatactcaaatggttttcaa
gtcattttggcaccttacggtctcaatgccgtgttgtatggtcaaaattacaaaggcaac
agtgaacagaatcaaaaggcttggcaggttcttttagaatggagtcatttctaccccatc
aagaatcctcaaagctcaacgttattcggtgcagagagcgaggatgttgagggtaccatg
ccgcctgctgtggaagtctttgttggtggtgttaggatgttgtatccaagctgctatgtc
tttgttgtccaggatgacatgtctaacgtgctcatgcaacagcagcagcaacaacaacaa
caacaacaacaacaacaacaacagcagcagcagcagcatcacaaccctacttcggccgtt
tcaccgatgcctatggctcccagtctcaacgtactttcaccaatgccgatggcggccacg
cccggccagtcgtatccaaacactgcacaaggcaatacctcagtatgttcagcacccagc
tcaccacaagacgctgtctaccccatcggggagtcgtcaactcattatccccagcgaacg
atggtggatgcatgtgttgggactgctggtgatatggatggtgggagttttacccatcaa
cttacccaaaaagtttggaaggagtggctagcagaaacagataaatctcccatcttcagg
acgaatgcttcaaagtcgacagcacctgacactcctggcagtgagacaacggatattcac
aagccggtcaaccacgaggaaggcgcagggccatctgcaggatcatcagaggcgaaagaa
tcgaaccaagctccccctatgtggagtttcagtgatccaacagtgaaagctgattgtaaa
tgccataggcaaaagtttctgaaatctaagcaatcggttccatttggaaaaacaccacca
ggacctggcaacagtcatatgagctcgggtcttggctcaaactcactcggtccaagcagc
aaacacaaagccgataaccggacggagaaaactgtcaagaactccaaatctacaattcct
tttcacataagaacttcaatgatggaagactactgtatgtacgataatgcagatatttct
aacgagaggattccagtgtctgcgtccgtggccacccctggtaccccaggggtgagcaca
agtatgaacggtgtcctacaggacatgaaagggggcagcgggaccctgacgaggttcccc
cagccaagccccatgcagagaactccaggctccgcggagccgcctcaggcgaacgaatcg
ccgccgtctaatgcaccgtcaccgttaaatccacctccaaatggaatattgggaaatcca
atggaccaaccaatgccaaccctcagtcccaaccctccccctaggagttcctcggactcg
ttggggggtatcgggagcatagcttccttcagagctgaactgaacgggataatagacctt
gccaagtcagatcctagccctaaacagcctttggtaggcgaactgagtgtgcctaaggag
gaggaggaggaggatgtttggagctgctttgagcttccttcagtcgaaggggatggaaat
agcaaacgaccaaggctaccgtccatgccccacagccaggaggacctccaggatggcaac
ctggagaatctgtacgagcacgacaacagtggggagaggttctcccagcctcataagaga
ctccgtcaagagaggcggaccaggagttgcttggacagtaacgtgttcagccttcaaaat
gatgtggataccctccagagggtcaaaacaccagattttgacccttacgagtttatggac
acgtcgcctactgagggtggatctagttccaccaggagcaagggcaaagatggcaagggg
aagcagagaggtctgcaacaaagaagaaacagtattaaaaaaggaaagaaacaggaggaa
gaagctcagaggaaagctgaaggggaaaaggccagacaagaggccatgacgcccatgaat
gtttcctacccaaatgagccgtttaaaatgggcgatttcggcgtccctcttttgcctcgc
ccagagtcatccagtctcaccacagagaaggacctgcagatcaccctcaatgattttgag
tccctctttgaatcctctgacgaagacgacgatagggttcctcttacgaacgtctcttct
gatttcccttgcggtccaaactcagaggagaatctttccacgaggacgttatttgggagt
tcaataagtagtagctccatgtcaggtcctcttacaggtggagatctgggtagaatgtac
cctacacctccctccgaagagcagactcacttctctccggtcaaccacccatgtccagag
ctgtccagtaatttgaccagttacggcagtaaccagacgagggacatgaccagtggtcca
atgaatgagcagtttgaaattgaaatagaagaaagtctctgtagtccaaggccagaacca
cttttggattggacatacgtgtataaagttcctgcagtggagaagatagttggtgctacg
atgtatgctcccttgaaatctcttcccagcagtagatgtccccctctgaaggttccagag
tactgtatttataaaccttcatggcagctaccgttatcaccaaagccagagctcatccca
ttaataaaggaatcgacaatacctatggtgcccagtgtggagatggacctaccagcatcc
aaccaaccgtctggactaaccccatcggcagggatcatggcatctcccgccatgtacccc
ggcagtcaggagcccaggagtgccgccaacccggacccgtccccagcagcttcggaggcc
tcctccttcaggaacctcaactccatagagcagccgtcctcggcggccatctgcccggag
tctcacagcctctacacggttctagcgctttccgactcccagctgaacatcttcaaagat
tgtaactttgacagcgcggtgatctgcgcctgcaacatggatatcaagggctcggatctg
gcggacgtgggggtttatttcactcagtgcaattgtggattcagtgctgtcatgaacagg
cgctacgccgtgggcagcggcctcttctccgaggacgagtctgaaatcacaggacaaagg
acagacgcccccctgtgggcctatcacagggacaatccctatctaacggaaatttttaat
cagaagcaactattacctcgtctgcagagttttgttaaggacggcgtcgaagagctacac
agaacttccaaaatagtgttgaagctcatccaagaccagtgtcatagcccgtattcatcc
cttcagagcctgctctctgtgatacgagagagaacggagtaccagtacgggcagatagcg
cgcagcaatctggagtacctcgatgcctgcgacgcttgcgtctcggctatcgatgacggg
cggcatttgtcagaatcagcgggccgaggagcctgggatccacagtacctcagacataga
tgtcttcatacgtgggcatacaaccctggttatgtgaggatacccctttcatctcaagac
atcgtgcaggtgttacgttcgttgcaacccctgcttcatgatgcaatacagaaaaaacga
accaaaaggttatgggaacgaccctatgcagtacagggccctctcacctggcaggtattc
ttcaacattgccatacaggatgcctccgagtctccagaacctctccccgttcctcctctc
ctggttggttacgagaaggactggatgtcatcgtctccatatgcagtactttattgggag
aaacttctattggagccattttcatcgtccagagatatcgcttacattgccttggtgcca
gatcaggagttcatttgcaaacgtgccaagacatttttcaaggaactcacttctgtgtac
gagagttgcaatttaggtcgacatgtgccgatggcgaaatccatgaggaatggtatcctc
aggattggtcagaaatacgcaagcaaagtcgaaagcgagcaggtggacagctggttcagc
gacatcaacgaactacccgaggcggccaagatcaaagtatttgcccaagtctgcaaagca
tatgtcgctccgtaccttatgaaagaccccccagatgcatcgatgtttaccagccaacca
gccaaaatggatagggcctatgccgcacacagcacggtacctgtcagcacatcagccatg
acaggctatcccgccggaggtgtacccaacggtagcgctgaatttgctgccaagggagcc
atggcagcacctacctcgaaaggcgtcaccacgtctgattccaccaaaacagaatctaag
gatgatagttcccccgaaattgcagcccacgcagactttgtccaacccccaggggtggtc
atctatgtggtggacccctttacctgtaaggaggatgaacatccagactatgctggcatc
accactttaggactcctaaggtgctttgcagaaatagtggagtgtctcccagagaatcta
gtcaaaaacattgccttccagattattcctcttcaccaagtgctccaggtggccaatagc
ggcacaggtcaacggcaactcagtcaactcaagtctcttgccttctcagtattctctcag
tgtcaccagacggtgaacccttccctcccagggaggagcctgaccgggttcggccccgct
gccgaactggataaggtcatcaaagcaaaagagagccgaagcatccatccaaaccaagtt
tactcaccgccgtacatcttggccccgctgaaggacaaacagacggagctcggcgagtcc
tttggtgacctgagggaggcctgcggggagctcttctgtacctactgcttgtcgcacgac
caaagatttctcctcacagcctgcacagacaacaagggcgaactcaacgagactgccatc
attaacatcgacataccaaacagtaaaaggagaaagaaggtttcagtcaacaacagagcc
ctgctgaagctctgggaattcttgctaggagtcatatcaaagtctgcgttaccatggagg
ctcgtgattggtcgctttggcaggttgggacagggtgaagtaagagattggagtgccttg
ttgagccgtcgatcgttgacgatgcagagtctgaaattgaaagaattgtgtggcatgtgc
agcgtcccagggagcagcgagtacccctgcatcctgagtgcatgcctggtgtccctggaa
ccagagacaggtctcaggattatggctgactcggtagctgcagacaagtgcagtaagagc
agccagcgggaccagcccagctgccagttgcacacccccgacgacgccacctgcacccac
atcatggtcttccccaccagtgctactaaacaagacgccagtgctacctatcagtcggaa
cccatcatggatctgaccttccccaaccccgtggacaacgttcccttgggggacgacttg
ttcaacgactctgacattgttcgaagcctgttcgaaaaccccattatggacgacgtcagg
tcgccgactcagttggaccatccacaggggtcgcccagcttgttgcctgctatgaacagt
atcggtattgatagtggtatcaagaattccagtggtttgccagagaacgtcctccccgta
gatgcagagaacgttctccaacagcccttagccctcggctactttgtctcaacagctaag
gcaggcaacctccccaagtggttttggtcgtcctgtccggaggctgaaacaaactgtccc
gtcttcctcaaggctgccttgcatgttaataatggcgctgtgcaacagacttcagatgat
atttatcaaaagcctcacacccactcgctggattctaacaaaaccacggatgtgctaaga
tatgttttggaaacatacaacggtctgtcatggttgacggtagatccagccactggtgac
cgccgatcctgccttccaatccacatggtggtcctcatgcagttatacaacacagccgct
gcccttctctga
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