KEGG   Apostichopus japonicus (Japanese sea cucumber): 139981638
Entry
139981638         CDS       T10891                                 
Name
(RefSeq) replication factor C subunit 2-like
  KO
K10755  replication factor C subunit 2/4
Organism
ajj  Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03030  DNA replication
ajj03410  Base excision repair
ajj03420  Nucleotide excision repair
ajj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ajj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139981638
   03410 Base excision repair
    139981638
   03420 Nucleotide excision repair
    139981638
   03430 Mismatch repair
    139981638
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ajj03032]
    139981638
   03036 Chromosome and associated proteins [BR:ajj03036]
    139981638
   03400 DNA repair and recombination proteins [BR:ajj03400]
    139981638
DNA replication proteins [BR:ajj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139981638
  DNA Replication Termination Factors
   ELG1-RFC complex
    139981638
Chromosome and associated proteins [BR:ajj03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139981638
DNA repair and recombination proteins [BR:ajj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139981638
  Check point factors
   HRAD17(Rad24)-RFC complex
    139981638
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 Rad17 Viral_helicase1 Mg_chelatase RCF1-5-like_lid AAA_14 AAA_16 AAA_11 AAA_24 RuvB_N AAA_19 Gp44_lid nSTAND3 AAA_assoc_2 ATPase_2 AAA_28 AAA_18 ABC_tran DNAX_ATPase_lid AAA_25 AAA_3 NTPase_1 AAA_30 MeaB AAA_5 SLFN-g3_helicase RNA_helicase FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 139981638
NCBI-ProteinID: XP_071850277
LinkDB
Position
15:complement(20709396..20719339)
AA seq 363 aa
MMETESQSKVESKGKEAGVVSEKDSEAKISTKSKPGKSSKKYQVPWVEKYRPTTLKDVAG
NEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARTLLGPIYKDAVMELNASNERG
IDVVRNKIKMFAQKKVTMSKGCHKIIILDEADSMTAGAQQALRRTMEIYSKTTRFALACN
ASDKIIEPIQSRCAVLRYSKLTDAQLLKRLLEICEAESITYDDTGLEAIIYTSQGDMRQA
VNNLQSTFSGFGEVTSENVFKVCDEPHPTMIKQMLDHCVQGEIDKAYEIMNHMWRMGYSP
QDIIGNVFKNCKTHPMPEFLKLEYVKEIGFTQMRIAEGVNSLLQMSGLLARLCKKTEEPQ
VES
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgatggagacggaaagccaaagcaaagtagaatcaaagggaaaagaagcaggcgttgtt
agtgaaaaggatagcgaagcgaagatatcaacaaagtcgaaacctggcaagtcgtcaaag
aagtaccaagtgccgtgggttgaaaagtacagacctacaacgctgaaagatgtagccgga
aatgaagagactgttagtcgattggaagtctttgccagggaaggaaatgttcctaacatt
attatagcaggaccaccaggaactggtaaaactacaagcatcctatgtctggcccggaca
cttctcggccccatctacaaagatgccgtcatggaactaaatgcatcaaatgaaagaggt
atagatgtggtccgtaacaagattaaaatgttcgcacagaagaaagtcacaatgtctaaa
ggatgtcacaagatcattatcctggacgaggcagatagtatgacggcaggggcgcaacag
gcactgcgcaggaccatggagatctattccaagacgacaaggtttgccctggcctgtaat
gcatctgacaaaatcatcgaacccatccagtcgagatgtgccgtgctgagatactcaaag
ttaacggacgctcaactcttgaagaggctcctggaaatctgcgaagccgagagcataact
tacgacgataccggattagaagcgattatttacaccagccaaggagatatgagacaggca
gttaacaatctccagtcaacgttctctggatttggggaggtcacaagcgagaatgttttc
aaagtctgtgatgagccacacccaactatgataaaacagatgttagaccattgcgtgcaa
ggagaaatagacaaagcatatgaaataatgaaccacatgtggaggatgggctattcccca
caggacatcatcggcaacgtcttcaaaaactgtaaaacacatccgatgccagaattcctg
aagctagaatatgttaaggaaattggtttcacccaaatgagaattgcagaaggggtgaac
tctctcttacagatgtcaggtttattagcaaggttatgtaagaaaacagaagaaccacag
gtggagtcctga

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