Apostichopus japonicus (Japanese sea cucumber): 139982423
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Entry
139982423 CDS
T10891
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139982423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ajj04131
]
139982423
Membrane trafficking [BR:
ajj04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139982423
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
Clathrin
CNH
VPS3_N
VPS18_solenoid_2nd
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
139982423
NCBI-ProteinID:
XP_071851370
LinkDB
All DBs
Position
16:1621675..1662764
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AA seq
861 aa
AA seq
DB search
MSLKAFELVPAVERLKLLGDKTKTSIECIECSGKNLYIGTSDCFVIHYLMEEVTQRNGKV
TYVSEKQNHKHLALRKPIKQLKAASALARILVLCDNVLSLLNMFNLEPILSGAKAKGVTS
FTVNDSPKHGDAFSIEIAACAKKKAVQVYVVTEEKITFIKEVAIPELPMTLAVDGFCMCV
AMETQYILVNYETGDVRDLYPISSPERKPFVSRIGKEFLLPGPGIGVFVTPAAISERPPV
KWAEDVNGVGFLYPYVVAMDTEFLTIHSILDQKQKQAIPFQNGCIIGDYEGKLFVASNKD
VYGLIPLPVEKQVQALLTDRQVDEALSLAMNFRQAGLSKEKFQKMYTNIQQQGGFIKFGE
HKLDEAKELFIRGRLDVRELICLFPDLLPSSSYFSRAVPLLHDYADVNQIVHGDAERLRE
CKEFLVGFLEEVRDLDAATGYRMEVDTALLKLYAASDPKKLNNFLTIENRCSLAESLEAL
GSQGCYHAQGILYKLHRDHEKAMNIWMRIQDQELVDSSFPGLDFIVEFLAKLSDHELVWR
YVEWCLQKDPELTVKIFTERPEDEPPTERMRPDTIIDYLHAYPTAVIRYLEHLVFQKKLE
KETYHTHLAVLYLSEVLKLRENPSTKAETLNLARSKLRHMLQFSNLYRVQVILSKVKETD
MYAECAVLYGKLEEHDRALRILVHKLQDYGAAENYCDINSKGRDLTYRKRLFQILLGVYL
DPMEGKKDSLLAPAISLLNSQTADFDTVRVLQLIPDSWSVGLVRQFLRHSVETNMHLART
RKIQNSLSRNENLQVKYHMMRQRREPVYLNEERLCQVCNQTFNEPKFVRYPNGVITHTHC
ARNKTICPITGKLFSIGKEAS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaaggcctttgaacttgtgccagccgtggagaggctgaaattactgggagac
aaaaccaaaacatcaattgagtgtatagaatgcagtggaaagaatctctacatcggaacg
agtgattgttttgtgatacattacttgatggaggaagttacacagaggaacggcaaagtc
acctacgtcagcgagaagcaaaaccacaaacatcttgctttgaggaaacccatcaagcag
ctgaaagccgcctctgctcttgcccgcatcctcgtcttgtgtgacaacgtcctcagtcta
ttaaacatgttcaacttagagccaattttgagcggtgccaaagcaaaaggggtcacaagt
tttacagttaacgatagtccaaagcatggagatgcatttagcatagagatcgcagcttgc
gccaagaagaaagccgttcaggtttacgtggtaactgaagagaaaataacattcatcaaa
gaagttgcaatacctgagttaccgatgaccttggcagtggacggtttctgtatgtgtgtt
gccatggaaactcagtacatcctggtgaattatgaaactggtgatgtccgagacctctac
cctatatcttcaccagagagaaagccctttgtatcaaggataggaaaggaatttcttctc
cctggtccaggcatcggtgtctttgtcacccctgcggccatttcagaacggcctcctgtg
aaatgggctgaagatgtcaacggtgttggcttcttatatccatatgtagttgccatggat
actgagtttcttacaattcacagtattcttgatcagaagcagaaacaggccattcccttt
cagaatggatgcatcattggagattacgaaggcaaactctttgtggcttctaacaaggat
gtgtatggacttatacctctcccggtagagaaacaggttcaagcattattgactgacaga
caagtcgatgaggcattaagccttgccatgaacttcaggcaagcaggcctaagcaaagaa
aagttccaaaagatgtacaccaacatccaacaacagggtggtttcatcaagttcggtgaa
cacaaactggacgaagcgaaggaactcttcatccgaggcagactggatgtcagagagctc
atctgtctgttccccgatctcctgccatcgtcttcatactttagcagagccgttccgctt
ctccacgactatgcggatgtgaatcagatcgtccacggcgatgccgagagattgcgggaa
tgcaaggagttcctggtcgggttcctggaggaggtcagagacttggatgccgctactgga
tacagaatggaggtagacaccgccctactgaaactctacgccgcctcggatccaaagaag
ctgaacaatttcctgacaattgagaaccgatgttctctggccgagagtctggaagctctg
ggttctcagggatgctaccacgctcagggcatcctctacaaactacacagagaccatgag
aaggctatgaacatctggatgagaattcaagaccaggaattggtggactcttcatttcct
ggactagatttcattgttgaattcctggcaaagttgagcgatcatgaattggtttggcgt
tacgtcgagtggtgtttacagaaagatcccgagttaaccgttaagatcttcacagagaga
cccgaagatgaaccccctaccgagaggatgcgcccagacaccatcatcgactatctccat
gcctatcccactgcggtcatcaggtacctggaacatctcgtctttcaaaagaaactggag
aaagagacgtaccatacacacctagccgtcctgtacctgagcgaagtcttaaaactccgg
gaaaatccatccacaaaggcagagacattaaacttagctaggtccaagctcagacacatg
ctacagttctctaatctctacagagttcaggttatactcagcaaagtcaaagaaacggat
atgtatgcagaatgtgctgtactttatgggaagctcgaagaacacgacagagctctaagg
atcttggtacacaaactgcaggattatggagctgctgagaactactgcgatatcaactca
aaaggacgggatctaacctataggaaacggttatttcagatcctccttggcgtatacttg
gatccaatggaagggaagaaagattcattacttgccccagccatatctcttctaaacagc
caaacagctgactttgatacagtcagggttctacaactcatcccagatagttggtcggtt
ggtctcgtgaggcagttcctcaggcactcggtggagacgaacatgcacctcgcacgaacc
cggaagatacagaactcgctctccaggaatgagaaccttcaagtgaaataccacatgatg
aggcagaggcgggaaccggtctacctcaacgaggaacgcctctgccaggtctgcaatcag
actttcaacgaaccgaaatttgtccgttatcccaacggggtcatcacacacacgcactgc
gctaggaataaaactatctgtcccattacaggaaagttattcagcatcggtaaagaagca
tcgtga
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