Apostichopus japonicus (Japanese sea cucumber): 139982572
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Entry
139982572 CDS
T10891
Name
(RefSeq) transcription elongation factor SPT5-like isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139982572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajj03021
]
139982572
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139982572
Transcription machinery [BR:
ajj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
139982572
RNA polymerase I system
139982572
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
139982572
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW1_SPT5
KOW
KOW2_Spt5
Spt5-NGN
KOW5_SPT5
KOW6_SPT5
KOW7_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
PPV_E1_N
KN17_SH3
Motif
Other DBs
NCBI-GeneID:
139982572
NCBI-ProteinID:
XP_071851585
LinkDB
All DBs
Position
16:complement(14169707..14204910)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSDSEEGSIISDDGGKSDGEEEVGSGGSLPGSPVPSGGDSPVGSPADSPIGSPVGSPVGS
PLGSPVGSPVGSPLGSPIGSPLAEVDDEDDDMMGSEAEEVPEGEEGEIIEGAEEEEEEGE
DLDEIDDEEDEEEDEEEDEDDFVVNEGSGPPRKKRKRKTGGIMDFILQEADVDEDGGEDE
EEDGWEEGAKDLIDREPAVVDDNELHGAHRLQQIWSQENEKEIEEYYRRKYAETSSSSGY
AAEEELPNAITQQGLLPGVKDPNLWMVKCRVGEEKVTAMLLMRKFLAYQYQDEPLQIKAV
VAPEGIKGMIYVEAYKQTHVKQAITGVSNLRYGQWKQQMVPIKEMTDVLRVVKETAILKP
KSWVRLKRGIYKGDLAQVDYFEPSQNQVTLKIIPRIDYTKPRGVIRKALTDQEKKRKRKP
GVKLFDQQAIRAVGGEVTTDGDYLVFEGNRFSRKGYMYKTLALSAIIYDGVKPTLAELEK
FDDKPEKLDIQLAPTKKTGSEVIHNFAPGDMVQVAEGELLHLQGQVITIDGNSITILPKH
EDLKDLLEFPSHELQKFFQVGDHVKVIEGRHEGDTGLIVRVEDNVVFMVSDLTMDEIKVA
PKTLQLCQEMGTGVDSMGQFSLQDLVQLDPQTVGVIVRLEKESMQVLNIHGKLVHVKPQA
LSKKKENRNALALDAEQNSIQSKDIVKVVDGPHSGRQGQIQHVFRSYIFLHSRLMTENGG
MFVCRARHVVLAGGKRSDVTPAAPGMGGMMSPRISSPMHPSSGGGQDQRGNYGGGVPRVQ
RDKTLIGQTVRITEGPYKGYIGIIKDATDSTVRLELHSMMRTISVDRNRVTIIGAKGKDG
STTSYGRTPMYGSQTPMYGTGSRTPLYGSQTPVHDGSRTPHYGSQTPLHDGGQTPSRSGA
WDPSVSNTPMRHSDSSDFSFDESSPSPQPYGSTIPSTPGYSPDTPQSGSHYNPGTPGGSS
GMYGSDTSYSPYQPTPSPGNYQPTPSPSGSFQQVSSPGSYQPTPSPQGYQHSSSPSSFHG
STPSPSGYPLTPVAPSPIGFNPATPGMANPLDPSQTEWHTADIEVKIKESHEDDDLIYKH
GVIRGMSGSMCSIYLLDEDRIVDVQCEHLEPVMPTKSDRVKVITGEDRESTGVLINIDGE
DGIVKMDLGHSNIKILSLNSLAKLHEKFA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagtgaagaagggagcattatctcagacgatggaggcaagagtgatggagag
gaagaggtcggaagcgggggcagtttaccgggtagtccagtcccttccggtggagacagc
cccgtgggtagtccagcggacagtcccataggcagcccggtcgggagtcccgtgggaagc
ccgttgggcagcccagtgggcagcccggtgggcagccccctcggcagcccgatcggcagt
ccgttggcggaagtagacgacgaagacgacgacatgatgggcagcgaggcggaggaggtt
cccgagggagaggaaggcgagatcatagagggcgccgaggaggaagaagaggagggggaa
gacttggacgaaatcgacgatgaggaagacgaggaggaagatgaggaggaggatgaagat
gacttcgtggtcaacgaggggagcggtcctccccgaaagaagaggaaacgcaagacgggc
ggaattatggacttcatcttacaggaagcagacgtcgacgaggacggtggtgaagatgag
gaggaagatggctgggaggagggcgccaaagacctgatcgaccgagaaccggctgtggtt
gacgacaatgaactgcacggcgcgcacaggctgcagcagatatggagtcaagagaacgag
aaagagatcgaagagtactaccgtcggaaatacgcggagacgtcgtccagcagcggctat
gcggccgaggaagagttacccaatgctatcactcagcaaggactactgcccggtgtcaag
gaccccaatttatggatggtaaaatgcagggttggtgaagagaaagtcacagccatgctg
ctgatgaggaagttcctggcttatcaatatcaagacgagccgctccaaatcaaagccgtg
gtcgcccccgagggcatcaagggaatgatctacgtggaggcatacaaacagacccacgtc
aagcaggccatcaccggggtcagtaatctccgatacggtcagtggaagcaacagatggtc
cccatcaaagagatgaccgacgtactccgggtcgtcaaggagacagccatcttgaaaccg
aaatcttgggtccgactgaagagaggtatctataaaggtgacttggcccaggtggactac
tttgaaccctcgcagaaccaggtgaccctgaagatcataccccgcatcgactacaccaag
ccgagaggggtcatcaggaaggccctgaccgaccaggagaagaaacggaagaggaaaccg
ggggtcaaattatttgaccaacaggcgatacgtgcagtcggaggggaggtcaccacagac
ggtgactatctggtattcgaaggaaaccgtttcagccggaagggttacatgtacaagacg
ctggctctaagcgccatcatctacgatggggtcaagcccaccctcgccgaactggaaaag
tttgatgacaaaccggagaaactcgacatacagttggctccaacgaagaagactgggtca
gaggtcatacataactttgccccaggggacatggtacaggtggccgagggtgagttgctt
cacctccagggacaggtgatcaccattgacggtaacagcatcaccatcctcccgaaacac
gaggacctcaaggacctgttggagttcccctcccacgagctgcagaagtttttccaggtg
ggcgatcacgtgaaggtcatcgagggtcgtcacgaaggggacaccggtctgatcgtgagg
gtggaagataatgtggtcttcatggtctcggatctgacgatggacgagatcaaagtcgcc
cctaagacgttacaactgtgccaagagatgggtacaggggtagactccatgggacaattc
agccttcaagatctggtgcaactagatccacagacggtcggggtaatcgttcgactggag
aaagaatccatgcaagtcttaaacatccatggaaagttggttcacgtgaaaccgcaggct
ctgtccaagaagaaggagaacaggaatgcgttagctctggacgcagaacagaacagcata
cagtccaaagatatcgtcaaagtcgtggacggaccccattcggggagacaaggtcagatc
caacacgtcttcaggagctacatcttccttcactctcgtctgatgacggagaacggcggg
atgttcgtctgtcgggccagacatgtggtcctagctggtggcaagagatctgatgtgaca
ccagcagctccaggaatgggtgggatgatgtcccccaggatatcgagccccatgcatccc
agcagtggcggaggacaggatcaacgaggcaattacggaggcggagttcccagagtccag
agagacaaaactctcattggacagaccgtcaggatcacggaaggaccatacaaaggctac
attggcattatcaaagatgctacagattccaccgttaggctagagcttcactctatgatg
aggaccatatcggtagacagaaatagggtgactatcattggcgctaaagggaaggatggc
tcgacgacgtcgtacggtcgcacacccatgtacggatcccagacccccatgtacgggacc
gggtccagaacgccgctgtacggctcccagacaccggttcacgatggaagcaggacccct
cattacggctcacagacaccccttcacgacggcggtcagactcctagtaggtctggtgct
tgggatccttccgtcagtaacacccccatgaggcacagcgattcttcggatttcagtttc
gacgaatcctcgccctcaccccagccgtacggttctacgatcccgtcgacaccgggctac
tccccagacacgccccagagtgggagccattacaaccccggtacccccggaggttcatct
ggcatgtacggtagcgataccagctactcgccttaccagcccaccccgtctccgggcaac
taccaaccgactccgagtccttcgggcagcttccagcaagtctccagccctggatcctac
cagcccaccccgtccccgcagggttaccagcactcctcgtcgcccagtagcttccacggg
tccactccgagcccctctggctaccctctcactccggtcgcaccttcgccaattggtttc
aacccggccaccccggggatggccaaccctctggatcccagccagaccgagtggcacacc
gcggacatcgaagtcaaaatcaaagagagccatgaagacgacgacctgatatacaagcac
ggtgtcatcaggggcatgtcgggctcaatgtgctccatatatctcttggacgaagatcgg
atcgttgacgtacaatgtgaacatctcgaacctgtcatgccgaccaagagtgatagggtg
aaagtcatcacaggcgaggaccgggaaagcacgggggtcctaatcaacattgatggtgag
gacggcatagttaagatggacctgggccattccaacatcaagattctctctctcaattca
ctggcaaagcttcacgaaaaatttgcgtag
DBGET
integrated database retrieval system
