Apostichopus japonicus (Japanese sea cucumber): 139982993
Help
Entry
139982993 CDS
T10891
Name
(RefSeq) LOW QUALITY PROTEIN: polyubiquitin-C-like
KO
K08770
ubiquitin C
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04120
Ubiquitin mediated proteolysis
ajj04137
Mitophagy - animal
ajj04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139982993
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139982993
04137 Mitophagy - animal
139982993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ajj04121
]
139982993
Ubiquitin system [BR:
ajj04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
139982993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
TBK1_ULD
OTU1_UBXL
DUF2604
UN_NPL4
Ubiquitin_5
Coilin_N
Rhomboid_N
Phage-tail_1
Motif
Other DBs
NCBI-GeneID:
139982993
NCBI-ProteinID:
XP_071852421
LinkDB
All DBs
Position
16:17150567..17158806
Genome browser
AA seq
1365 aa
AA seq
DB search
MPSNIQRLVYCGMLLRYNYTLAHYEIKDNSSVQLLSVTQILIFYINLYGDKLSLGVNSTD
SIGNIVSMIECQESLSRGQHCLMLFDRELEKEKSLSDYSIQDESILQLQPILLESIRIRV
LVNTSKQLLIGAEPEDKISDVKFKIQDKEGIPYGHQQLNVEGKQLEDSKPLSHYNIGKGN
IKCIYLSLHDIMKIEIRTASGSTSTIAVKNDNTIKEVKTRIEDFTNIPVTRKQLQDELTL
SDYNIENHSIFSLVNLQFGLRLTVTIYRNSLIDKTVTLVMDTCATVQDLKDTIQENADIP
SEQQSLLFNDECLLDDKLLSEYNIKNDSNLQCVLAKTDGVHVFVDTLTGAKISLDVEPSD
TVRSVKTRIRDEEGIPIDEQLIDFAGVELHDERTLSYYHGIKQSTMHLRLRCWNMDIYVR
TPTNRAIMLKVEPSDTIENVKSYIHDKEGIPTLQQKLIFECKQLEDGRTLSYYNVCKGKT
LYLVLLPMELFVQTLCDKKLTLEVDPLDRIEDVKSKIQEKEGIPPDQQRFIFAGRQLEDG
RTLSDYKIQQESTIHMVLRLRGGMQIFVKTLTGKVITLPVGPSDTIDNVKSKIQDKEGIP
ADQQKIIFAGKQLEDERTLSDYNVRMESTLYLVLRLRGDEELQPRDDSMCIFVQIMSSRT
VKLRVDPQETISKVKSKIQDQVGNSQDFSQLTFAGKTLCDGQTLLFYSIEDQATLLLVPC
XCEVSHVYVKPESGGSMKLRYAPQDTVGAFKRKVQDILGVSPNYQYLTFNNIQLEDGNTF
SDYQIQGGSTLYLYHQGTIQVIVAHPGRDALTVHCRSRDTVQILKQKLLSQQFCLSLSGT
ELKNDKSISSYNIKANTVLRLEEVTNLNNNVTHAVSLGQYEGTTVCRGTKRALHECSDDG
ASQTLNEAQYNNSNVRQNNSKQNDGYIVQVNFGIRNKIFRFLLTDVENLRKLKERVYVVE
GDVHPDQQRIYGRGTELIDEQELVSSHVHDGTCILELYLRRSKQISVLVIGMHGVRHKVT
VDIFSTIEQLKKHLYWEKNFSLVGKVLMFNDRHLDDSATFSNYNIDDKSVLYALEIPENH
MNIKIRISTRDVASVLIHKSKTIKTLKLLVRQQTFIPVNQQELTLHGTVLEDNTTLLEYF
QAQEDGHILTLSLIHHIRISLTVCINMFKSSDYVVQSVNLLGSDTIDMLTHIVYQRVFIL
PKQQQLKKNGQILEHSKTLSKSNLINGDIIFVDILPLCKITINTGKGHKPVTVEVLPNDT
ISEVKDHLQKESGISMSNRCLLYEGAVLEEHKSVDDYDIKDGSVLFLSQRPPELVTLTFQ
RTSGEVSELKFNPRDPDSVQCTIQNIIKDENESASKSHVYECKQF
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgccttctaacatccagcgcctcgtctattgtgggatgctattacgatacaattatact
cttgcacattatgagatcaaagacaattcatccgtgcagctactgtcagttacacagatc
ttgatcttttacataaacttgtacggtgataaactgtcccttggagttaattcaaccgat
tccattggaaatattgtatccatgattgaatgtcaagaatcactgagtagaggtcagcat
tgcttaatgctttttgatagggagttggaaaaagagaagtcactaagtgattatagcatc
caggacgaatccatcttacagctccaaccaatcctgctagaaagtatacggatccgtgta
ttggttaatactagtaagcaattactaattggtgcagaaccagaagataaaattagcgat
gtgaaattcaaaatccaagataaggaaggcattccttacggccaccagcaacttaacgtt
gaaggcaaacagttagaagattctaaacctctttctcattacaatattgggaaaggaaac
atcaaatgtatttatttaagcttacatgatatcatgaagattgagataagaactgcttct
ggaagtacaagtacaattgcagttaaaaatgataacaccatcaaggaggtaaaaacgagg
attgaagattttacaaacatacccgttacaagaaaacagttacaagatgaactcactctc
tctgactataatattgagaatcatagtattttcagtctcgtaaaccttcaatttggacta
agactaaccgttaccatttacaggaacagtttgattgataagactgtcactctcgtgatg
gacacttgtgccacagtgcaggacttgaaagacacaatccaagaaaatgcagacattcct
agtgagcagcaaagtcttctgttcaatgatgagtgcctactagatgacaaattactttcg
gaatacaatatcaaaaatgatagcaacttacagtgtgtactagcaaagacggacggtgtg
catgtttttgtcgacacattgacaggggcaaaaattagtcttgatgttgaaccttcagat
actgttagaagtgtgaaaactagaattcgagatgaagagggaattcccattgatgaacag
ttgattgactttgcaggtgtggagttacatgatgaaagaacactttcttattaccatggt
ataaaacagagcactatgcatcttcgtttacgatgttggaacatggacatttatgtaaga
acaccgactaatagagcaataatgctcaaagttgagccttcagatactattgaaaatgtg
aaatcctatattcacgacaaggaaggcatacctactcttcaacagaagcttatatttgaa
tgtaaacagttagaagatggcagaacactttcttattacaatgtttgtaaggggaaaacg
ctgtacttggtgttactgcctatggaactttttgtgcaaaccttgtgtgataaaaaatta
actctggaagttgatccgttagatcgaattgaagacgtaaaatctaaaattcaagaaaag
gaaggaattcctcctgatcaacagagatttatttttgcaggtagacagttagaagatgga
agaacactttctgactataaaattcagcaggagagcactattcatatggtgttacggctt
agaggaggtatgcaaatttttgtgaaaacacttaccggtaaagtaataactctgccagtt
ggaccgtcagataccattgataacgtaaaatctaaaattcaagacaaggaaggaattcct
gctgatcaacagaagattatttttgcaggtaaacagttagaagatgaaagaacactttct
gactataatgttcgaatggagagtaccctgtatcttgtcttaagactacgtggtgatgag
gagttgcaacctcgtgatgatagtatgtgcatattcgtacaaattatgtcgagtaggaca
gtaaaactaagagttgatcctcaagaaactataagcaaagtaaaatctaaaattcaagac
caggtcggaaattcccaagattttagtcagctaacatttgcaggcaagacactgtgtgat
ggacaaacccttctgttttattcaatagaagatcaagcaactcttctgttggtgccatgt
tgatgtgaagtcagtcatgtatacgtaaaacctgaatctggtggatcaatgaaacttcga
tatgcaccacaagatacagtcggagcattcaagagaaaagtgcaggacatactaggtgtt
tcacctaattatcaatatttaacattcaataacatacaattagaagatgggaatacattc
tctgactaccagattcaaggcggatcaactctctatctataccatcaagggacaattcaa
gtgattgtagctcatccaggcagagatgctctaactgtacattgtcgaagtcgtgacact
gtgcaaatcttaaaacagaaactactttcccagcagttttgtctcagtctttccggtact
gagcttaaaaacgataaatcaatatcttcctacaacattaaggccaatacagttcttcgg
ttagaggaggtaacaaacttgaataacaatgttactcatgccgtcagtttaggtcaatac
gaaggaacaacagtatgtcgtggcaccaagcgagctcttcatgaatgttcggatgatggt
gcgagccaaacccttaatgaggctcaatacaacaattccaatgttcgacaaaacaattcc
aaacaaaacgatggatacatcgttcaagtaaattttggcattagaaataaaatctttaga
tttcttttaaccgacgttgaaaacttaagaaagttgaaagagagggtctatgtagtggaa
ggagatgtgcatcccgaccagcaacggatatacggacggggcactgaattgatagatgaa
caagagctcgtatcatcacatgtccatgatggtacatgtatcctagaactatatttacgc
aggtctaaacaaatttctgttctggtaattggtatgcatggggtacgacataaggttact
gtagatatctttagtacaattgaacaactaaagaaacatctttactgggagaaaaatttc
agtttggtaggaaaggttttgatgtttaatgacagacatcttgatgattccgctaccttt
tcaaattacaacatagatgacaagtcggtactttatgcacttgaaataccagagaatcac
atgaatatcaaaattcgaatatccacaagggatgttgcttctgtattaattcataagtca
aaaacgattaaaaccttaaaattgttagttagacaacaaacattcatccccgtcaatcag
caggaactaacgctacatggcacagtgcttgaagacaacacaacattgttagaatacttc
caagcccaagaggacggtcacatattgacactctctctaatccatcacatacgtatatca
ctaactgtttgtattaatatgttcaaaagtagtgactacgtggttcaatcagtgaacctt
ctaggatctgatacaatcgacatgttaacacacatcgtttatcaaagggtatttattcta
ccaaagcaacaacagttgaagaaaaatggtcagatacttgaacatagcaagaccttgtca
aagtctaacttaataaacggagatattattttcgtggacatcttaccactgtgtaagatc
acaattaacacaggtaaaggacataagccagtcacagttgaggttctgccgaacgatact
atcagtgaagtgaaggatcacttacaaaaggagagtgggatttcaatgtctaatcgatgc
ctactatatgaaggagctgttctggaggaacacaagtctgtagacgattacgacattaaa
gacggttcagttctgttcctttcccagagaccaccagaacttgttacattaactttccag
aggacttcaggggaagtaagtgaactgaaatttaatcctcgtgatcctgactcagttcag
tgtacgatacaaaatatcatcaaagatgaaaatgagtcagcttctaaaagccacgtgtat
gagtgtaaacagttttag
DBGET
integrated database retrieval system
