Apostichopus japonicus (Japanese sea cucumber): 139984203
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Entry
139984203 CDS
T10891
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139984203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139984203
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139984203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
139984203
NCBI-ProteinID:
XP_071854097
LinkDB
All DBs
Position
17:14451563..14495405
Genome browser
AA seq
1419 aa
AA seq
DB search
MKEKATLFSFFSKLSSKKSTSPEVADDAGVKKSVSPKESAKTSPKLTTETTQEKLKLVTK
PKAAACKFNEFEVVWAKLDGYPWWPSLVCNHPTAQIFHKGVKRPEIHVQFFDQSSSRAWL
SERYVEKYEGSTARECQPGGRFFNQKAHIKESLRSADKAMKMSPDERKDLVLCIPSDEES
EDEDDMDVVDGSDGSSDSTEEAESKKRAQSRPKRAAGNKAKRRRVVAMPSDSESSGEEFK
PESDDDDHESEGSSGVDEKDITESETDPDTPKKAKKRKRGSQSTPQVDASGRKIRKVLAP
SSTPAKKVAADIFSPSRKPSTPSTPAVRTAPSSTPAKKVSADFSTPSSKPSTPSRKPSTP
SHKPSTPARKPSTPSTPVVSSATKSKLSAFHATDVSTPSKVTDSEHESYPHNKLSWLQPD
NLRDAKGHLKTREDYDPRTLKVPQSFLDKCTPAIRQWWDIKAKHFDTVLFFKMGKFYELF
NMDAEVGVKELGLIYMKGENAHCGFPEIAFGRYSDTLIKKGYKVARIEQTETPDMMQERC
RGLGRMATKFDKVVKREVCRVSSKGTRTYSFIDGDSCDSQSSYLLAVAERSEGDTVGEES
TYGVCFVDTSIGKFHIGQFRDDRHSSRFRTLISHHSPAQVLLERGKLSQKSHQIIQNNLL
SVLKDQLVPGSEFWSAQKTLKVLSDKNCFEDTVKDKKDADDNIQNWPDVIKKMVSEGDSL
GLTPKSRYELALSALGACIWYLKECKLEQELLSMCSFEEYRPLDTKHVTKETDEAVFSKT
RQHLVLDGISLSNLEILQNSLTGDQDGTLLERLDRCSTPFGKRLFRQWLCAPLCNPNSIN
DRLNAVEDLMEHQDQVTEAVEVLKKLPDLERFLSKIHSLGSLRKSEDHPDGRAIFFEDAT
YGKRKILDFLTTLDGFQDAGDILKIFQKRAPKFKSKILRQSLLLEREDDSKGGRYPDLKE
HLDLFDNAFDKKKAKDAGAIVPRPGVDEDYDEALRDIKATQRKFDEYLEKQRRRLGCSSI
KYWGSAKNRFQLEVPEAALSRKTPEEYELQSSKKGFKRYWTPVITDLLADLITAEDRRDV
ALKDSMRRVFHKFDEHYKQWDQAVQCLAVIDVLISLSNFSMAGEDVMCRPEFVEPTKDTK
PFIAIENGRHPCIVRTFSGGDYIPNHTYIGTSDVSMDTSDGSCDTSCCVLVTGPNMGGKS
TLMRQVGLIVITAQLGCYVPADSCKLTPVDRVFTRLGARDNIMSGESTFYVELSETSSIL
QHATKHSLILMDELGRGTATYDGTAIASAVVKEVSENIGCRTLFSTHYHSLVEEFSHDTN
IRLGHMACMVENENDEDPSQETITFLYKFVGGACPKSYGFNAARLAEIPDEIIKLAREKA
HQFEESANRLKIFRAVQKLSSLQPNQDNFLQLKKLMNTC
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaaggcaaccctcttttcctttttctcaaaattatcatcgaagaagtcaact
tcaccagaagttgcagatgatgctggtgtgaaaaaatctgtgtctccgaaggaaagcgca
aagacatcaccaaaacttacaactgaaacaactcaggaaaagttaaagctggtcacaaag
ccaaaagccgcagcatgtaaattcaatgagtttgaagtggtttgggctaaactggatggt
tatccctggtggcctagtctggtttgcaaccatcccaccgctcaaatcttccataaagga
gtgaaacgtcctgagatccatgttcagttcttcgaccagagctccagtagagcttggctg
agtgaaagatatgtcgagaaatatgagggcagtaccgccagagagtgtcagccaggggga
cgtttctttaatcagaaagctcacatcaaggagtcgctccggtcggcggacaaagcgatg
aagatgtctccagatgagaggaaggacctcgtcctctgtatcccgtctgacgaagaaagt
gaagatgaagatgacatggacgtcgtcgatggctcagatggcagctctgactcaactgaa
gaagcagaatctaagaagagagcgcagtctagacctaaacgagccgcggggaataaggct
aaaagaaggagagtggtggccatgccatcagacagtgaaagttcaggggaagaattcaaa
cccgaaagtgacgatgacgaccatgaatctgaagggagcagtggcgtcgatgaaaaagac
atcactgagtctgagactgatccggatacacctaagaaagcaaagaagaggaagcgtgga
tctcagagcaccccgcaagtcgacgcttccggcagaaagattcgcaaagtgctggctcca
tcatccacacctgccaagaaagttgctgctgacatttttagtccgtctcggaagccgtcc
accccatcaactcctgcagtaaggactgctccttcatcaacacctgccaaaaaagtttct
gctgacttttccactccttccagcaagccatctaccccatcccgcaagccatccacccca
tcccacaagccgtccaccccagctcgcaagccatccaccccatcgactcccgtcgtgagt
tctgcgacgaaatcgaagctgtcagcatttcacgcaactgatgtgtcaactccgtctaaa
gtaacagattctgaacatgaaagttacccacacaacaagttgtcatggttacagccagat
aacctgagagatgcaaaaggtcacctcaagacaagagaagactacgaccctcgaactctc
aaagtaccgcagagtttcctggacaaatgcactcctgcgatacgtcagtggtgggatata
aaggctaaacattttgacactgtgctgttcttcaagatgggaaaattctacgaacttttc
aacatggatgccgaggtaggagtgaaggagcttggcttaatttacatgaagggagagaat
gctcactgtggcttccccgaaatcgcctttggtagatacagcgatactctgatcaagaag
ggttacaaagtggcaaggattgagcagactgaaactccagatatgatgcaagagagatgc
cgaggtttgggaagaatggcaaccaagtttgacaaagttgtgaagagagaagtttgcaga
gtatcaagcaaaggaacaagaacttacagttttattgacggagattcttgtgatagccag
agtagctatcttctcgcagtagctgagagaagtgagggggacacagtgggtgaagagagt
acctacggtgtctgctttgtcgatacctccattggcaaatttcatattggtcagttcaga
gatgacagacatagctccagatttaggacactgatttctcatcattcgccagctcaggtt
ttactagaaagagggaaactgtcacagaagtctcatcagatcattcaaaataatcttctc
tctgtgctgaaagaccaactggtacctggcagtgaattctggagtgctcaaaaaaccctg
aaggtgttgtcagataaaaattgtttcgaagatacagtgaaagataagaaagatgcagat
gacaacatccaaaattggccagacgttatcaaaaagatggtttcagagggtgattctctt
ggtttgacaccaaagagtaggtatgaactggccctatcagctcttggtgcctgcatctgg
tatctcaaggaatgcaaactggaacaggaactgctatcaatgtgtagctttgaagagtac
cgcccactagatacaaaacatgttactaaggaaactgacgaggctgttttttccaagaca
agacaacatttagttctggatggaatttctctctcaaatcttgaaattttgcaaaatagc
ctaacaggagatcaggatggaactctactagagcgccttgaccgatgttcaaccccgttt
ggaaaacggctatttagacagtggctttgtgcacctctctgtaaccccaactcaattaat
gatagactcaatgcagttgaggacttgatggaacaccaagatcaagtcacggaagctgtt
gaagttctcaagaagctgcccgacttggagaggtttctcagcaagatacacagccttgga
tctcttcggaagagtgaggatcatcccgatggcagagctatattttttgaagatgctact
tatggaaagcgaaagattcttgatttcctgactacactcgatggtttccaggatgcagga
gacattctcaaaatatttcaaaagagagctccaaaatttaaatcaaagattcttagacag
agtttactcctggagagagaggatgacagtaagggaggtcggtatccggatttgaaggaa
catttggatctgtttgataatgcattcgacaagaagaaggccaaagatgccggtgcgatc
gttccgagaccgggagttgatgaagattacgatgaagctttgcgtgacatcaaagcaaca
cagaggaagtttgacgagtacttggaaaaacaacgacgaagattaggatgttctagcatc
aagtactggggatcggctaagaatcgcttccagctggaagtacccgaggctgctctttct
cgaaaaacgccagaagaatacgagctacagtcatcaaagaaaggttttaaacgttactgg
actccagtcatcacggacttgctggcagatcttataaccgctgaagatcgtagagatgtt
gcattaaaagattccatgagaagagtctttcataagtttgatgaacattacaaacaatgg
gaccaggctgttcagtgcctagcagtgatagatgttctgataagcttatcaaacttcagc
atggctggagaagatgtcatgtgccggccagagtttgtggaacccaccaaggatactaag
cctttcatagcaattgaaaatggccgccatccttgcatcgtaagaacattttctggaggc
gattacatccctaaccatacatatatcgggacatcagatgtttccatggataccagtgat
ggctcatgtgacaccagttgttgtgtgttggtcacgggtcccaacatgggcggtaaatct
actttgatgaggcaagtcggtctcatcgttatcacggcccagcttggttgctatgtccca
gcagacagctgcaagctcacaccagtcgacagggtatttacaagactgggagctcgggat
aatattatgtcaggtgaaagtactttctacgtggaactcagcgagacatccagcatcctt
caacacgctaccaagcattccttgatcttgatggatgagcttggtcgtggaactgctacc
tatgatggaactgccattgccagtgcagttgtcaaggaagtctctgagaacatcggctgt
cgcacactgttttcaactcactatcattcactggttgaagagttctcccatgatactaat
attcgattgggtcatatggcttgcatggtagaaaatgaaaatgatgaagatcccagccag
gaaactatcacctttctgtataaattcgtcggcggagcttgtcctaagagctacgggttc
aatgccgcacgattggccgaaatacccgatgagatcattaaattagcccgagagaaagcc
catcagtttgaagaatctgctaaccgtttgaaaatcttcagggctgtccagaaattgtca
tcactccaaccaaaccaagacaacttcttacagctcaagaaactcatgaacacttgttga
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