Apostichopus japonicus (Japanese sea cucumber): 139984611
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Entry
139984611 CDS
T10891
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03030
DNA replication
ajj03410
Base excision repair
ajj03420
Nucleotide excision repair
ajj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139984611
03410 Base excision repair
139984611
03420 Nucleotide excision repair
139984611
03430 Mismatch repair
139984611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajj03032
]
139984611
03400 DNA repair and recombination proteins [BR:
ajj03400
]
139984611
DNA replication proteins [BR:
ajj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139984611
DNA repair and recombination proteins [BR:
ajj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139984611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
Rad17
nSTAND3
AAA_18
RuvB_N
RNA_helicase
AAA_14
AAA_17
AAA_22
PTCB-BRCT
AAA_5
AAA_30
AAA_7
AAA_19
AAA_33
AAA_16
NTPase_1
Motif
Other DBs
NCBI-GeneID:
139984611
NCBI-ProteinID:
XP_071854658
LinkDB
All DBs
Position
17:32555665..32576074
Genome browser
AA seq
1040 aa
AA seq
DB search
MQDIRSFFTQKKGSNVKRKWPEEEEEDDDFQTTKKKPAKKKSKKGGVIFDSDSDSDVEIV
SVSKAKGSSKSNGSVSKKTSPYMSKTPAKKKEIDAASFFGASPVQRSNKKVNNVSSKQKA
VKVENPRLEIEDHSDDDFQKTLEMLDKQSVPTKTSFASKLSEKMQTSKVLVPQTPEATPQ
RRSPRKRVQQAEASPLKTKQTKAVGRSQKTRPEIKKEIIRYSPRKTSARSTPEKSKGDSS
TPKKADRRGTPVSSKVSPKSPGDGHNNKGSPPDTAEKKRGGPAYRSYLQREGPRCLGSRE
LPKGEEACLDGLSFVLTGVLEYFDKGELKTHIESLGGAVRTSVSKKTSYLVIGREPGDSK
TQKAQEMKVKMLDEVSLYDLISSRPGKRKANTTKKPSPSKKGSNEKAGRTKQEPNYITPS
KIDKGKFSWKPSLANSQLSDSQGSEFNSQESLGRQNSQDHKSSSGQPQASTQMWVDKYKP
NNSKQIIGQQGDRSNAKKLTKWLQRWHDNNFGPHKDKARFNRDDGFTFKAALLSGPPGVG
KTTTAQIVCKEVGFTYFELNASDARSKKTLQECVSEYLDNTVLGSFFSSKPKTKDQHSKH
CLIMDEVDGMSGNEDRGGMQELIQLIKGSRVPVICICNDRSHPKIRSLCNHCFDLRFQRP
RLPQIKAAMMSVAFKEGVKIAPALVDNMIMASNQDVRQVLHNMSMWSAGQRSDKMEETTQ
RDGKEQTVKKDLKMGPWDVLRQVFSSSEEISKMTFNDKVGLFFHDYSIAPLFVQENYPNV
IPRKAGGDMKKHLDLLSKTADSIAFGDLVDKQIRSSMKWNLLPLQAVFASVLPGEYMRGH
LGGMINFPSWLGKNSSRGKYHRILQELQTHMRMSAATSLQSINQEYLPRMREHLTNPLLS
EGSDGVDDVVGVMNDYDLTREDFDNILELTQFSGFREPMKAVPPKVKAAFTRAFNKSSHL
NPFSLDWGGKAKAKRGGGFEDAPGVEGDAQETQEEEEEDDEDDKALIAKLKGKTTSKKKE
PAGKKGKGPAKGKGRAKGKK
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatattagaagtttctttacacagaagaaaggtagcaacgtgaagaggaaatgg
ccagaggaggaagaagaagacgatgactttcaaaccaccaagaaaaaaccggccaagaaa
aaatcaaagaaaggaggagtgatatttgattcagattctgattctgatgttgaaattgtc
tctgtgtctaaagcaaaaggtagctcaaagtccaatggctctgtcagtaagaaaacatca
ccttacatgtcaaagacgcctgcaaagaagaaagaaatcgacgctgcttcgttctttgga
gcctcgccagttcaaaggtcaaacaaaaaggtcaacaatgtgtcaagcaagcagaaagca
gtgaaagtggagaatccaaggctagagatagaagatcacagtgatgacgactttcaaaaa
actttggagatgctagataaacagagtgtgcctacaaagacatcttttgccagcaagctc
tctgagaagatgcaaacgtccaaagtcttggtacctcagactccagaggcgacgccccag
agaagaagccctcgcaagagggtccagcaggcagaggctagccctctgaaaaccaaacag
acaaaggctgtggggaggagtcagaagacaaggccagagattaagaaggagatcatcagg
tatagtcccagaaagacatcagcaagatcaacaccagagaaatccaagggcgattcttct
actcccaaaaaggccgaccggcgaggtacgccagtcagtagcaaggtgtcgcctaaatca
ccaggggatggacataataataagggctcccctccagacactgcggagaagaagcgtgga
ggtccggcttacaggagctacttacagagggaaggaccacgttgccttggatcaagagaa
ttaccaaagggagaggaagcttgcctcgatggattatcgttcgtactgaccggggtcctg
gaatattttgataaaggtgagctcaagactcacatagagagcctcggaggtgcagtgcga
acgagtgtcagcaaaaagacgtcttatctggtgattggcagagaaccgggggactccaag
acacagaaggctcaagaaatgaaagtgaaaatgctggatgaagtaagtctctatgacttg
atcagctcaagaccaggaaagaggaaagcaaacactacaaagaaaccaagtccatccaaa
aaaggttcaaatgagaaagcaggaaggaccaaacaggaaccaaactacatcactcccagc
aagattgataagggaaagttttcttggaagccgagccttgcaaactcacagctgtcagac
tcacaaggttcagagttcaacagtcaagagagcttaggccgacaaaactcgcaggaccat
aaatccagcagcggacaacctcaggcctcgacacagatgtgggtcgacaaatacaagccc
aacaattccaagcaaataatcggccaacagggagacaggagcaatgctaagaaactgaca
aaatggctgcagaggtggcatgacaataactttggtcctcataaagataaagctcgattc
aaccgagatgacgggttcacattcaaagcagctctcctgtctggtcctccaggtgtcggt
aaaactacaacagcacagatcgtctgcaaggaagttggttttacatattttgaattaaat
gcaagtgatgccaggagcaagaagacattacaggagtgcgtgtcagagtatttagataac
actgtcctgggcagtttcttcagcagcaagcccaagaccaaagaccaacactccaagcat
tgccttattatggacgaagtggatggcatgtctgggaatgaagacagaggtggtatgcag
gaattaattcagctgatcaaaggttctcgtgttccagtaatctgtatctgcaacgatcga
agccatccaaagatcagatcgctttgtaatcattgctttgatctgcgctttcaacgaccc
aggttaccccaaatcaaggcggccatgatgtcggttgcatttaaggaaggtgttaaaata
gcacctgcattggtggacaacatgataatggcttctaaccaagatgtacgacaggttctt
cacaatatgagcatgtggtcagcaggtcaaaggtcagataaaatggaggaaacaacacaa
agagatggaaaagaacaaactgtgaagaaagacttgaaaatgggaccctgggatgtcctg
agacaagtgttttcatccagtgaggaaatatcaaagatgactttcaacgataaagtcggc
ctcttttttcacgattattcaatcgcaccgcttttcgtgcaggaaaattatcccaacgtg
ataccgcggaaagcaggcggcgacatgaagaaacacctcgatctgttgagtaaaacagcc
gacagcatagccttcggggatctggtggataaacaaatcaggagctcgatgaagtggaat
ctgctaccactacaggcagtttttgctagtgtgctccctggagagtatatgaggggtcac
ctagggggaatgatcaacttcccgagctggttaggaaagaattcatccagaggcaaatat
caccggattcttcaggagctgcaaacacacatgaggatgagtgctgcgacgtctctgcag
tcgatcaaccaagagtaccttccacgtatgagagagcacctcacaaacccactgttatcg
gaggggtcggatggtgtggatgatgtcgtaggggttatgaatgactatgaccttaccaga
gaagattttgataacattttagaactgactcagttttcaggctttcgagaaccaatgaaa
gctgtaccaccaaaggtcaaagcggctttcacgagagcattcaacaagtcgtctcacctc
aacccattcagtctggactggggcggcaaagcaaaagctaagagaggcggtggctttgag
gatgcgccaggtgtagagggcgacgcgcaagaaacacaggaggaagaggaagaagatgac
gaagatgacaaggctttgatcgctaagttgaagggtaaaacaaccagcaagaagaaagaa
cctgcgggcaagaaaggaaaaggaccggccaaggggaaggggagagctaaaggaaagaaa
tga
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