KEGG   Artibeus jamaicensis (Jamaican fruit-eating bat): 119034893
Entry
119034893         CDS       T07223                                 
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
  KO
K04556  parkin [EC:2.3.2.31]
Organism
ajm  Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm04120  Ubiquitin mediated proteolysis
ajm04137  Mitophagy - animal
ajm04141  Protein processing in endoplasmic reticulum
ajm05012  Parkinson disease
ajm05014  Amyotrophic lateral sclerosis
ajm05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ajm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    119034893 (PRKN)
   04120 Ubiquitin mediated proteolysis
    119034893 (PRKN)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    119034893 (PRKN)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05012 Parkinson disease
    119034893 (PRKN)
   05014 Amyotrophic lateral sclerosis
    119034893 (PRKN)
   05022 Pathways of neurodegeneration - multiple diseases
    119034893 (PRKN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ajm04131]
    119034893 (PRKN)
   04121 Ubiquitin system [BR:ajm04121]
    119034893 (PRKN)
   03029 Mitochondrial biogenesis [BR:ajm03029]
    119034893 (PRKN)
Enzymes [BR:ajm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     119034893 (PRKN)
Membrane trafficking [BR:ajm04131]
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    119034893 (PRKN)
  Aggrephagy
   Other aggrephagy associated proteins
    119034893 (PRKN)
  Xenophagy
   Other xenophagy associated proteins
    119034893 (PRKN)
Ubiquitin system [BR:ajm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    119034893 (PRKN)
Mitochondrial biogenesis [BR:ajm03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    119034893 (PRKN)
SSDB
Motif
Pfam: zf-RING_14 zf-RING_12 ubiquitin IBR_2 IBR_1 Rad60-SLD IBR Rcat_RNF216 Crinkler
Other DBs
NCBI-GeneID: 119034893
NCBI-ProteinID: XP_053524721
LinkDB
Position
Unknown
AA seq 470 aa
MIGTWCLSVFVRFNSSHGFPVEVEPTTSIFQLKEAVAKRQGVPADQLRVIFAGKELGNDS
VVQSCDLDQQSIVHIVLRPGREGQEMASTGRDRPWSTVGAFRREPESLTRVDFSGSVLPT
NSVGLAAILDEDSRNSAPPGGHAAGRPAYNSFYVYCKGPCRRVQPGKLRVRCGTCQQATL
TLAQGPSCWDDVLIPNRMRGECQSPGCPGTRAEFFFKCGAHPTSDKDTSVALNLITTNSR
NITCITCVDVRSPILVFQCDSRHVICLDCFHLYCVTRLNDRQFMHDPQLGYSLPCVAGCP
NSLIKELHHFRILGEEQYNRYQHYGAEECVLRMGGVLCPRPGCGAGLLLEPEQRDVTCEG
GDGLGCGLVFCRDCREAAHEGECSSLAASAAVTQVYRVDEKAAEQARWEESSKETIKQTT
KPCPRCRVPVEKNGGCMHMKCPQPQCQLDWCWHCGCEWSRTCMGDHWFDV
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgatcggtacgtggtgcctgtcagtgtttgtgaggttcaactccagccacggtttccca
gtggaggtcgagcctaccaccagcatcttccagctcaaggaggcggttgctaagcgacag
ggagttccagctgaccagctgcgggtgattttcgcggggaaggagctgggcaacgactcg
gtggtgcagagctgcgacctggaccagcagagcatcgtccacattgtgctgagacccggg
agagaaggccaggaaatggcctccactggcagggaccgtccctggagcaccgtgggggcc
tttcggagggagcccgagagcctaactcgcgtggacttcagtggctctgtcctcccgacc
aactcggtgggtctggccgccattctggatgaagacagcaggaacagcgccccgccaggc
ggacacgcagcaggtagaccggcttacaacagcttttatgtttattgcaaaggcccctgt
cgaagagtgcagccaggaaagctcagggtgcgctgcggcacctgccaacaagccacgctc
accttggcccagggcccatcctgctgggacgatgtcttaatccccaaccggatgaggggc
gagtgccagtctccgggctgcccgggaacgagagccgagtttttctttaaatgcggagca
cacccgacctctgacaaagacacatccgtagctttgaacctgatcacgacgaacagccgg
aacatcacctgcataacatgtgtggatgtcaggagtcccatcctggtgttccagtgcgac
tcccgccatgtgatctgcctggactgcttccacctctactgcgtgaccaggctgaacgac
cggcagttcatgcacgacccgcagctcggctactctctgccttgtgtggctggctgcccc
aactccttgattaaagagctccatcacttccggattcttggagaggagcagtacaacagg
taccagcactatggcgccgaggagtgcgtgctgcggatggggggcgtgctgtgcccccgc
ccaggctgcggggccgggctgctgctggagccagagcagagggacgtcacctgcgaagga
ggcgacggcctgggctgtgggctcgtgttttgccgggactgcagggaagcagcccacgaa
ggcgaatgcagctcgctggccgcctcagcagcagtgactcaggtctacagagtggacgag
aaggcggccgagcaagctcggtgggaggagtcctccaaagagacgatcaagcagaccacc
aagccctgcccccgctgccgggtgcccgtggagaagaacggaggatgcatgcacatgaag
tgcccgcagccccagtgccagctggactggtgctggcactgcggctgcgagtggagccgc
acctgcatgggcgaccactggttcgacgtgtag

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