Artibeus jamaicensis (Jamaican fruit-eating bat): 119049177
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Entry
119049177 CDS
T07223
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ajm
Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119049177 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajm03019
]
119049177 (MTREX)
03041 Spliceosome [BR:
ajm03041
]
119049177 (MTREX)
03009 Ribosome biogenesis [BR:
ajm03009
]
119049177 (MTREX)
03016 Transfer RNA biogenesis [BR:
ajm03016
]
119049177 (MTREX)
Enzymes [BR:
ajm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119049177 (MTREX)
Messenger RNA biogenesis [BR:
ajm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119049177 (MTREX)
Spliceosome [BR:
ajm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119049177 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
119049177 (MTREX)
Ribosome biogenesis [BR:
ajm03009
]
Eukaryotic type
Pre-60S particles
Helicases
119049177 (MTREX)
Transfer RNA biogenesis [BR:
ajm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119049177 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119049177
NCBI-ProteinID:
XP_037001027
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAPGTRKSKDKGKWKAPPGPAEKAGKRPDGNLQSESTNVGKT
KRDVDFESTDEPIFGKKPRLEESITDDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFSTAMQVLRDAGDLAKGDQK
GRRGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTGEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
DKVKSSEEQYNQIAIPNEESVVVYYKIRQQLARLGKEVEDYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLENSATEAAKPAKPDE
RGEMQVVPVLVHLLSAISSVRLYIPRDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLRKVIQKVEAFEHRMYSHPLHSDPSLEAVYTLCERKAQIALDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQAAALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggcgatgagctgttcagcgtgtttgaggacgactctgccgctgcg
ccgggaaccaggaagagcaaggacaaggggaaatggaaggcgcctccagggcctgcggaa
aaggccgggaaacgtcctgatggtaatttacagtccgagtccactaatgttgggaaaacc
aaaagagacgtggatttcgagagcacagatgaacccatttttggaaagaagcccaggcta
gaagagtcaataaccgacgacttaagcctggcagacttgatgcccagagtgaaagtacag
tcggttgaaacggtcgaaggctgtacccacgaggttgcccttcctgcagatgaagattat
ttaccacttaaacctcgagttgggaaagctgcaaaggaatacccattcattcttgatgct
tttcaaagagaagccattcagtgtgtggataataaccagtccgtgttggtgtctgcacac
acatcagcggggaagactgtatgtgccgagtatgccatcgctttggccttaagggagaag
cagcgggtgatatttaccagccccatcaaggctctgagtaaccagaagtaccgcgagatg
tatgaggagttccaggacgtcggcctgatgacgggagacgtcactattaaccccacggca
tcctgtctcgtcatgaccacagagattctgagaagtatgctgtacaggggctctgaagtc
atgcgtgaagtcgcttgggtcatatttgacgaaatccattacatgagagactcagagcgc
ggtgtggtctgggaagaaaccatcatcctgcttcctgataacgtccactatgtcttcctg
tcggccaccattccgaatgcccggcagtttgctgaatggatttgccatttacataaacag
ccctgccacgtgatctacacggactaccggcccacgcccctgcagcactacatcttcccg
gccggcggggacggcctgcacctggtggtcgacgagaacggggacttccgggaggacaac
ttcagcaccgccatgcaggtgctgcgggacgcaggggacctggcgaaaggcgaccagaag
ggccggaggggagggacgaaaggaccgtcaaatgtgttcaagattgtgaagatgatcatg
gaaaggaattttcaacccgtgatcattttcagcttcagtaagaaggactgtgaagcctac
gctcttcagatgaccaaactggacttcaacacaggtgaagagaagaagatggtggaagag
gtgttcagtaacgcaatcgattgcttgtcggatgaagataagaagctcccccaggtggaa
cacgtgcttcctcttctgaagcgggggatcggcattcaccacggtggtctgctcccgatt
ctgaaagaaaccatagaaatcctgttttccgaagggctgataaaggccttatttgcaacg
gagacttttgcgatgggaattaacatgccagccagaacagttttatttacaaatgcccga
aaatttgatgggaaagattttcgatggatttcctccggggagtacatccagatgtccggc
cgtgcgggcaggcgggggatggacgacaggggcatcgtgatcctcatggtggacgagaag
atgagcccgaccgtggggaagcagctgctcaagggctcggctgaccctctgaatagtgct
ttccatctaacctacaacatggttttgaacctgctccgcgtggaggaaatcaaccccgag
tacatgctggagaagtccttctaccagtttcagcattaccgagcgatcccgggggtggtg
gacaaggtgaagagctcggaggagcagtacaaccaaatagcgatcccgaacgaggagagc
gtggtcgtttattacaagatccgacagcagctggccaggctggggaaggaggtggaggac
tacatccacaagcccaagtactgcctgccgtttctgcagcccggccgtctggtgaaggtg
aagaatgaaggagatgattttggttggggagtggtggtgaatttctcaaaaaagtcaaat
gttaagcccaactctggggagctggaccccctctacgtggtggaggtgcttctgcgctgc
agccgagaaagcctggagaactccgcgaccgaggcggccaagccggccaagcccgacgag
aggggcgagatgcaggtggttccggttttggtgcatctcctgtctgccatcagcagcgtc
cggctgtacatccccagagacctgcggccgctggacaacaggcagagcgtgctcaagtcg
atccaggaagtgcagaagcggttcccggacggcgtcccgctgctggaccccatcgacgac
atgggcatccaggaccaggggctgaggaaggtcatccagaaggtggaggcgttcgaacac
cgcatgtactcccacccgctgcacagcgaccccagcctggaggccgtgtacacgctctgc
gagaggaaggcgcagatcgcactggacattaagtcggcaaagcgagagctcaagaaagcg
aggacagtcctgcagatggacgagctcaagtgccgcaagcgcgtcctgaggcggctgggg
tttgccacgtcttccgacgtcatcgagatgaaggggcgcgtggcctgtgagatcagcagc
gccgacgagctgctcctgaccgagatgatgttcaacggcctcttcaacgacctgtcggcg
gagcaggcggccgccctgctgagctgcttcgtgttccaggagaattctagcgagatgccc
aaactgacagagcagttagcaggcccactccgtcaaatgcaggaatgtgctaaacgaatc
gcgaaagtctcagcagaggccaaattggagattgacgaggagacgtacctgagctccttc
aaacctcacctgatggacgtggtgcacacctgggcgaccggagcaacgttcgcccacatc
tgcaagatgaccgacgtcttcgaaggcagcatcatccgctgcatgcggcgcctggaggag
ctgctgcggcagatgtgccaggcggccaaagccatcgggaacacggagctggagaacaag
ttcgcagaaggaatcaccaaaatcaagagagacatcgtgtttgctgccagcctctacctg
tag
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integrated database retrieval system
