Acinetobacter johnsonii: RZ95_02185
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Entry
RZ95_02185 CDS
T04178
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ajo
Acinetobacter johnsonii
Pathway
ajo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZ95_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajo03019
]
RZ95_02185
03016 Transfer RNA biogenesis [BR:
ajo03016
]
RZ95_02185
Enzymes [BR:
ajo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RZ95_02185
Messenger RNA biogenesis [BR:
ajo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RZ95_02185
Transfer RNA biogenesis [BR:
ajo03016
]
Prokaryotic type
tRNA degradation factors
RZ95_02185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALV71837
LinkDB
All DBs
Position
complement(439401..441836)
Genome browser
AA seq
811 aa
AA seq
DB search
MKNWVDPEAKAEAERYDNPIPSRTLILETIEEKKTALSHADLVEIFEIADQKSIEALNHR
LIAMVRDGQLMKDGFKFQIAEEQPEHEATVYINSKGFGTANIAGHEDLLLPERELRQVFN
GDRVKVRQTSVDRKGKAWGFITEVVQHRVKQIIGKVSIHDGEYFIQPANPNAHQPITLEK
ELIEHAQVKVGDSVRVAIDDYPTKDELATGHIVQSMADKADTEIIIPQTILEFGLPYEFP
EEVIKEAESFKEPSVQDREGRIDLRDLALVTIDGEDARDFDDAVYAEKRPGGGYRVVVAI
ADVSHYVRSGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLNL
SRAGRVTKFEFYPSVMHSKARLTYTNVAQYFEGDSSAIPEVRDVRKSLNTLFQLYQVLKG
LRAERHAMEFETVETYMTFDELGGIKEILPRTRNDAHKLIEECMLLANVAAAEYALQHDV
PMLYRIHEPPEFSRIQKVRDFVKLLGLPFPEQPTQKDYQAVIDATKDRIDAPSIHAVLLR
SMMQAYYGANNAGHFGLAYEAYTHFTSPIRRYPDLLLHRAIKAKLKHKPAPLSEAALDDA
GQHFSATERRADEASRSVTTWLKCHYMQQHLGEEFVGTISAVAEFGLFVTLKDLYVDGMI
HVSQLGDDYFVYDQPSQSLIGQARGQSFSLGDEVKIKVAAVNLEDRKIDFELLQQLSHGG
RPIRSRAPRVGKAKTARSESKEEVFSESTNTSPSNSGDQPIRRKKDKSQPSSYSKKPGKK
SSSKSETKVKDKVKKKSKPKKKKSNAKAKTE
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattgggtcgatcctgaagcaaaagctgaagctgaacgttatgacaaccctatt
ccgagccgcacgctcattttagaaaccatcgaagaaaaaaagacggctttatcgcatgcg
gacttggtcgaaatttttgaaattgcagatcaaaaaagcattgaagcgctcaaccatcgc
ttaattgcgatggttcgtgatggtcaactgatgaaagatggctttaagtttcaaattgcc
gaagagcaacctgaacatgaagcaacggtttacatcaatagtaaaggctttggcacggcg
aatattgcaggtcatgaagacttacttttacctgaacgcgaactgcgccaagtgtttaat
ggtgaccgtgttaaagtgcgtcaaacctcagtggaccgcaaaggtaaagcttggggcttt
attaccgaagtggtgcaacaccgtgtgaagcaaatcattggtaaagtatcgatacatgac
ggtgaatactttattcaaccagcaaatccgaatgcgcaccaaccgattactttagaaaaa
gagttaatcgaacatgcacaagtcaaagtgggcgattcggttcgtgtcgcaattgatgac
tatccaaccaaagatgagttggcgaccggtcatattgtgcaatcgatggcagacaaggcc
gacactgaaattattattccgcaaaccattttagagtttggtttgccgtatgagttccca
gaagaagtcattaaagaagcagagagctttaaagagccttcagtgcaggaccgtgaaggt
cgtattgacctacgtgatttagccttagtcactattgatggtgaagatgcacgcgacttt
gatgatgcagtctatgcagaaaaacgtccaggcggcggttaccgtgtggtggtggccatt
gcggatgtgagtcactatgtccgttctggtaaaccgctggatgatgaagcccaagaacgt
ggtacatcggtatatttcccgcactttgttttaccgatgttgcctgaagctctttcgaat
ggcttatgttcactcaatccgcatgtggaccgcctgtgtatggtttgtgatttaaacctg
tcacgtgctggtcgggtcaccaagtttgagttctatccatcagtcatgcattcaaaggca
cgtttaacctataccaacgttgctcaatactttgaaggtgacagcagtgccatcccagaa
gtccgtgatgtgcgcaaatccttgaacaccctgttccaactctatcaagtcctcaaaggg
ttacgtgctgaacgtcatgccatggaatttgaaaccgttgaaacttacatgacctttgat
gagctgggcggtattaaggaaattttaccgcgtacgcgtaatgatgctcacaaactgatt
gaagaatgtatgttgttggcaaacgtggcagcggctgaatatgcgctacaacatgatgtg
ccaatgttataccgtattcacgaaccacctgagttttcacgtattcaaaaagtacgcgac
tttgtcaaactgttaggtctaccattcccagagcagccgactcagaaagactaccaagcc
gtgattgatgcaaccaaagaccgtattgatgcaccaagtattcatgccgtgctgttacgt
tcgatgatgcaagcctactacggcgcgaataacgcaggtcactttggtttggcatatgaa
gcgtacacgcacttcacttctccaattcgtcgctacccagacttgttgttacaccgtgcc
attaaagccaagttaaaacataaacctgcacctctttcagaggccgctttggatgatgct
ggtcaacatttctcggcgactgaacgtcgtgcagatgaagcttctcgctctgtcaccaca
tggttgaaatgtcattatatgcagcagcatttgggtgaagagtttgtcggcaccatttct
gccgtagcggaattcggtctatttgtgacgctcaaagacttatatgttgacggcatgatc
catgtcagccaattgggcgatgactactttgtctatgaccaaccaagtcagagcttgatt
gggcaggcacgtggtcaaagctttagcttgggcgatgaagtgaaaatcaaagttgcagca
gtgaatttagaagaccgcaaaattgattttgaattattgcagcaactctcacatggtggt
cggcccatacgtagtcgagcgccccgtgttggcaaagccaaaacagcacgaagcgaaagt
aaagaagaagtctttagcgagtcgacaaacacctctcccagtaacagcggagaccagccc
atacgacgcaaaaaagataaatcccaacctagctcctacagcaaaaagcctggtaaaaaa
tcttcatcaaagtctgaaacaaaggttaaagataaagtgaagaaaaagtcgaaacctaaa
aagaaaaaatcaaacgcaaaagcgaaaactgagtaa
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