Acinetobacter johnsonii: RZ95_11280
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Entry
RZ95_11280 CDS
T04178
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
ajo
Acinetobacter johnsonii
Pathway
ajo03030
DNA replication
ajo03430
Mismatch repair
ajo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ajo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RZ95_11280
03430 Mismatch repair
RZ95_11280
03440 Homologous recombination
RZ95_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajo03032
]
RZ95_11280
03400 DNA repair and recombination proteins [BR:
ajo03400
]
RZ95_11280
Enzymes [BR:
ajo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RZ95_11280
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
RZ95_11280
DNA replication proteins [BR:
ajo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RZ95_11280
RNase H
RZ95_11280
DNA repair and recombination proteins [BR:
ajo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RZ95_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_H
RNase_T
Rv2179c-like
DNA_pol_A_exo1
ATG29_N
RVT_3
SAPI
Motif
Other DBs
NCBI-ProteinID:
ALV73403
LinkDB
All DBs
Position
2298274..2299698
Genome browser
AA seq
474 aa
AA seq
DB search
MSQTITLYVDGACRGNPGLGGWGAYIITETEEHKLCGGEDNTTNNRMELTAAIEGILFCP
TDAKLVVWTDSTYVKRGITEWITGWKKKNWKDVKNPDLWKKLDAACQGRDIDWHWVKGHA
GHEGNEMADQLANLGADQTQAQLRQSKTATTEPSVDKKKVEPDWLLNDPFGLGFDDEEAD
DSEDLAESEIHVTEQEPSLVAEPELATTTQCSIEQTPEVVASVDLTQLKQHPQIVITPRK
VEVFGPRQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDSENV
HGISDDFLKDKPLYQEIADTLFAYLKGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAV
TDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDM
DALSHSEQQNGQSQRQTLDIELAVIHPSAEELEAHETWVKQYQEKHGTPCLFAK
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaacaattaccctgtatgtcgatggtgcttgtcgtggaaaccctggtcttggg
ggatggggcgcctacattattacagaaactgaagaacataaactgtgtggcggtgaagac
aacaccaccaataaccgtatggaactcaccgcggccattgaaggcattcttttttgccca
accgatgcaaagttggttgtctggacagattcaacctatgtcaaacgcggcattaccgag
tggattacgggttggaaaaagaaaaactggaaagatgttaaaaacccagatttgtggaaa
aaactcgatgcagcctgccaaggccgtgatatcgactggcactgggttaaaggccatgca
ggtcatgaaggtaacgaaatggcagatcaattggcaaaccttggtgccgatcaaacacag
gctcaacttcgtcagtctaaaacagcgacaacagaaccgtctgtagataaaaaaaaagtt
gaaccagactggttgttaaacgacccttttggtttaggtttcgatgacgaagaagccgat
gacagcgaagatttagccgaaagtgaaatacacgttacagaacaagagccaagtttagtc
gctgaaccagaacttgctacaacaactcagtgttctattgaacaaacgcctgaagttgtg
gcaagtgtggatttaacacaactcaaacaacatccacaaattgtgattactccacgtaag
gttgaggtctttggacctcgacagctcatcctcgatacagagaccaccggtttttattat
caagatggcgatcgcattattgaagttggtgcgattgaaatggtgaaccggaagctcaca
ggcagctctattcatatctacatcaacccgaaaaaacctgtgggcgattctgaaaatgtc
cacgggatctctgatgactttttaaaagataaaccgctgtatcaagagattgctgacact
ttatttgcctatctcaaaggtgcggaaatcattgcgcataatgcaagcttcgatatgaac
ttcttagacatggagttcaagcgtgcaggatttgttgcactttctgaagtttgtgcagtg
acagataccctcgcgatggcaaaatctaagcatccggggcaaaaaaactcactcgatgcc
ttagttcgccgttacgaaattccacagcgtgaccgtaccttccacggggccttactggat
gctgaaattctagccgacgtttacttggctatgacaggtggtcaggtttcctttgatatg
gatgccctgtcacatagtgaacaacaaaatgggcaaagtcagcgtcaaacactggatatt
gaactggcggtaattcacccttcagccgaagaacttgaagcacatgagacttgggtcaaa
caataccaagaaaaacatggcacaccctgcctttttgccaaataa
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