Acinetobacter johnsonii: RZ95_14920
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Entry
RZ95_14920 CDS
T04178
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ajo
Acinetobacter johnsonii
Pathway
ajo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZ95_14920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajo03019
]
RZ95_14920
03009 Ribosome biogenesis [BR:
ajo03009
]
RZ95_14920
Enzymes [BR:
ajo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RZ95_14920
Messenger RNA biogenesis [BR:
ajo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RZ95_14920
Ribosome biogenesis [BR:
ajo03009
]
Prokaryotic type
rRNA processing factors
RZ95_14920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALV74033
UniProt:
A0A0U3RK15
LinkDB
All DBs
Position
3067088..3070570
Genome browser
AA seq
1160 aa
AA seq
DB search
MKRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYYKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQL
DLQHLLDLWAQIQNTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQIDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGSDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVQVPVEIAAFLLNEKRHTLVYLEQTSGVRVTVLPHPHLETPHY
EISYNPEGFAPTSYERTEATRLSEKELGYESSEWHLDGADHVHQHAAPAPAPAQQEKGNK
KPRNNAPQQQVAQQAPVQAAPSSSPCAWLENLFVQKQAATVDQSRSANNAAAAIEQMVNG
GAVSRGQFGQVGTPAVAPVAPSNNVYMSSAPVHAKSEHREDKHVEKEERGTRHNKKRPNK
HKESREQNAQHDNQVHEEIVQVSRQDQQRQDRYEQRPERNEPQRQDRHEQRSERSEQQRQ
DRSERSEQQRQEPRENKRSSRRQHGEQQQNTDVQNEQQNVMPRRDRRNQPRPERPNRHRD
PSVLNEQATEAAPAVVQEPQVKVELIEAPRQEMITTAHVVNVDQAQSEIVALTPPAHTET
KPQQAAVAKAEVEVKAEKVVQEKATEVVVAPAEQQAEQKPRESVKRASNDPRQRRRQQRA
AHTQQTETPKLTPSQVPTLGQYTISSLIRHVYGEDCSVLIEQFGLIPTFNRALQKFTEEY
AATLSKTVTTTAVEAEKKPVTRDVEITKAQPEAEPVPVLDLTPPAPVSEQRVANDPRERR
RLAKLAAEQAKQARETAPVAESSAPETAVVAETLAEEAAPVVTPQESEPVLATESEAPVA
VESSEVKSSADVAAVEEVEVVVAPVQAKAPRASKQAEKVEVTETVAETAADESDKSDSDK
PVRPRRPRGRPPKKASPTES
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaacacatgcagaagagattcgcgttgcacttgtcact
gggcagcgtctttacgattttgacttagaaaatcgtacccgtgaacaaaaaaaatccaat
atctataaaggtcacgtgactcgcgttgagccttctttagaagccgtctttgttgaatat
ggtgcgggacgtcaaggcttcttgtctatgcgtgaaatcgcaaactcttattacaaagct
gaccctcgccaaacttccaatattcgtgaactgattactgaaggcactgagcttttagta
caggtagagaaagaagaacgtggcaacaaaggtgctgcactctctaccttcatttcttta
gctggtcgctacttggtactcatgccaaacaacccgaaaggtggtggtattagccgtcaa
atttcaggttcagtacgtgaagaattgaaagaaatgttggcgtcgttaaatgtacctcgt
ggcatgagcgtaattgtacgtactgcgggtattggccgttctcaagaagaattacaactc
gacctacagcacttacttgatctttgggcgcaaatccaaaacacagcaagttctggtcca
tcaccaatgctggttcaccaagaagcaggcgtggtgacacgtgcgattcgtgattattta
cgtgatgatgttgctgaaatcttaattgattcagagcaagcctataacgaagcctataac
ttcgtaaaagcagtcatgcctcgtcaaatcgacaagttaaaaacctatacgctaaatgag
ccgttatttgcgcattttggtattgaaagccaaattcaaacagcttatgaacgtgaagtt
aaacttccttcaggcggttcaatcgttattgaccaaaccgaagcattagtgtcaattgac
attaactctgcaaaatcaacccgtggtagtgacgttgaagatacagcgctcaataccaac
cttgaagcagcggaagaaattgcacgtcaactgcgtttacgtgacattggtggtttggtt
gtaatcgactttatcgacatgaccaaagaccgtaaccaacgtatggttgaagcgaaactt
cgcgaagcaacacaaagcgatcgtgcccgtatccaattcggtcaattgtctcgttttggc
ttgatggaaatgagccgtcaacgtctacgcccttcgcttgaagaagcaacaggttatgtc
tgcccgcgctgtcatggcacaggtatggtgcgtgacttgcgttcattatcgctttcaatt
atgcgtaaagttgaagaaattgcgctgcgcgaacgtcatggggaagttcaagtacaggtt
cctgttgaaattgcagcattcttattgaatgaaaagcgtcacacgttggtttacctcgaa
caaacctcaggtgttcgtgtgacagtgcttccgcacccacacttagaaaccccacattac
gaaatttcgtataaccctgaaggctttgcaccaaccagctatgagcgtacagaagcaaca
cgtttaagcgaaaaagagttgggttacgagtcatcagaatggcatttagatggtgcagat
catgtgcatcaacatgctgctcctgcacctgcacctgcacaacaagaaaaaggcaacaaa
aaaccacgtaacaacgcgccacaacaacaagttgcgcaacaagcccctgttcaagctgca
ccatcaagtagcccatgtgcatggctagagaacttgtttgtacaaaaacaagctgcgact
gtcgatcaatcacgttctgcaaataatgctgctgctgccattgagcaaatggtgaatggt
ggtgcagtgagccgtggtcagtttggtcaagttggcacgcctgctgtggcacctgtcgcg
ccaagcaacaatgtctacatgagctctgcacctgttcatgcaaaatctgaacaccgtgaa
gataagcatgtagaaaaagaagaacgcggcacacgccacaacaaaaagcgccctaataag
cacaaagagtcacgtgagcaaaatgcgcaacatgacaaccaagttcatgaagaaattgtg
caggtctctcgtcaagatcaacagcgccaagatcgttatgaacaacgccctgaacgcaat
gaaccacaacgccaagaccgtcatgaacaacgctctgagcgcagtgaacaacaacgtcaa
gaccgctcagagcgcagtgaacagcaacgtcaggaaccgcgtgaaaacaagcgttcatca
cgtcgccaacacggtgaacaacagcaaaacactgatgttcaaaacgaacagcaaaatgta
atgccacgtcgtgaccgccgtaaccaacctcgtccagagcgcccaaatcgccaccgcgat
ccaagtgtattaaatgagcaagcgactgaagcagcgccagctgtggttcaagaacctcaa
gttaaagttgagttgattgaagcaccgcgtcaagaaatgatcacaacagcccatgtggtc
aatgtcgatcaagcgcaaagtgaaatcgtggcattaactccgcctgcacacaccgaaacc
aagcctcagcaagctgctgttgcgaaagcagaagttgaagtaaaagctgagaaagtggta
caggagaaagcaactgaagttgtagtagcacctgctgaacaacaagcagagcaaaaacca
cgtgaaagcgtaaaacgtgccagcaatgacccacgccaacgccgtcgccagcaacgcgct
gcacacacacagcaaactgaaacacctaaactcacaccttcacaggtgccaactttaggt
cagtacaccatcagcagcttgattcgccatgtctatggtgaagactgttcagtgctgatt
gagcagtttggtttaattccaaccttcaaccgtgcccttcagaaatttactgaagagtat
gcagcaacgttaagcaaaactgtgacaacgactgctgttgaagcagagaaaaaaccggtc
acccgtgatgttgaaatcacaaaagcgcagcctgaagcagagccagttccagtattggac
ctgacaccgcctgcacctgtgtctgaacaacgtgttgcaaatgacccgcgtgagcgtcgt
cgtttagctaaacttgctgctgaacaagccaaacaagcacgcgaaacagcacctgttgct
gaatcgtcagcgcctgaaacagcggttgttgcagaaacgcttgctgaagaagctgcaccc
gttgtaactccacaggaaagcgaacctgttcttgcaacagaaagcgaagcgcctgttgcc
gttgaaagcagcgaagtgaaaagctcagctgatgtagctgcggttgaagaagtggaagtt
gttgttgctccagttcaagccaaagcgcctagagcgtcaaagcaagctgaaaaagtagaa
gtaactgaaactgtagcggaaacagctgcggatgagtcagacaaatcagactcggacaag
ccagttcgcccacgtcgtccacgtggtcgtccaccgaaaaaagcgagcccgactgagtcg
taa
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