Amphritea japonica: AMJAP_0487
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Entry
AMJAP_0487 CDS
T06992
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ajp
Amphritea japonica
Pathway
ajp03030
DNA replication
ajp03430
Mismatch repair
ajp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMJAP_0487 (dnaE)
03430 Mismatch repair
AMJAP_0487 (dnaE)
03440 Homologous recombination
AMJAP_0487 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajp03032
]
AMJAP_0487 (dnaE)
03400 DNA repair and recombination proteins [BR:
ajp03400
]
AMJAP_0487 (dnaE)
Enzymes [BR:
ajp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMJAP_0487 (dnaE)
DNA replication proteins [BR:
ajp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMJAP_0487 (dnaE)
DNA repair and recombination proteins [BR:
ajp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMJAP_0487 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BBB25086
UniProt:
A0A7R6P9K7
LinkDB
All DBs
Position
530227..533721
Genome browser
AA seq
1164 aa
AA seq
DB search
MTDPAFVHLRMHTEFSLVDGLVRIKELVGVAKDQQIPAIAITDQVNLFALVKFFKATTGA
GIKPIFGADVWLENESEPESPPHRLTLLAMNEKGYRNLMELISLAYEQGQSVQPELALLK
KSWIFDRSQGLIVLSGAKEGEVGRALSDNDSARAVVEQWQQVFQDRFYLEIQRTGRPGDE
SCVHASVQLADETGCPLVATNEVMFIRPEDFEAHEVRVCINQSRTLEDPNRPKNYTEQQY
LRSAEEMAELFSDIPSAVDNSVEIAKRCNVELDLGTYYLPKYPIPDGMTMDQFFADVSWK
GLEERLDILLDKDAPDYAEKRKPYEERMVFELDIITQMGFPGYFLIVMDFIQWGKDNGVP
VGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDY
VAETYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPFEIGMTLTRAMDE
EPLMREFVEGNEEAQEIMEMAFKLEGLTRNVGKHAGGVVIAPTKLTDFSATYCDELGQGL
VTQFDKNDVEEAGLVKFDFLGLRTLTIVDWAVKTIDRIRAKTGEEPLDIALIDLEDRPTF
DLLQSAETTAVFQLESSGMKDLVRRLQPDRFEDIVALVALFRPGPLQSGMVDDFILRKHG
QAELAYPHADYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKP
EEMAKQRTSFLEGSEQNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTH
YPAPFMAAVLSSDMQNTDKVVIFVEECRTMKLPLVLPDVNFGEYMFTVNDEGEIVYGLGA
VKGVGEGPIEAIVEARNDGGEFSDIFDFCKRVGSKKLNKRVLEALVRSGALDHMGPDRAQ
IWACIPEALKAADQSERNQNAGMFDLFGEVEAEQPRDPYAEYMKLRKWTDKERLQGERET
LGLYVTGHPIDEYESELPHFISKRIGELQPQRGQQQKMLGLVVDVRVMKTKKGDPLCFVT
LDDRTSRIEVSLFGEAYDEYRTVLVKDAVLLIEGEITVDSYSGTDKLKVRGNSVVDITQC
RARYGKHIEIDCDEQQLRERPLKAFGELLTAHKSSVKMPVALKYSRIDASALLTLGEAWQ
VPPTDELLLKLKDQFGGDAVRIRY
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccggcatttgtacatctgcgcatgcataccgagttttcactggtcgatggt
ctggtgcgtataaaagagctggttggtgttgctaaagaccagcagattccagcgattgcc
ataaccgatcaggtaaatctgtttgctttggttaaattctttaaagcaacaaccggtgcc
gggattaaaccgatatttggtgcggatgtgtggcttgaaaacgaatctgagcctgagtca
ccgccccatagactgaccctgctggcgatgaatgaaaagggttatcgcaatttgatggag
ctcatctcgctggcttacgagcaagggcagagcgtccagccggaactggcactgctgaag
aaaagctggatctttgatcgctcgcagggcctgatcgttttgtctggcgcaaaggagggc
gaagtcgggcgggcgctatctgataatgactctgcccgggctgtagttgagcagtggcaa
caggtgtttcaggatcgtttttatttagaaattcagcgtactggccgtcccggtgatgaa
agctgtgttcatgcatcggttcagttggcggatgaaacgggttgcccgttggttgcgacg
aacgaagtgatgtttatcaggcctgaagatttcgaagcccatgaggttcgtgtctgtatt
aaccagagccggaccctggaagatcctaaccgcccaaagaactacaccgaacagcagtac
cttcgctctgctgaagagatggctgagttgtttagcgatattccctccgctgtggacaac
agtgttgagatcgctaaacggtgtaatgtcgagctcgatttagggacctattatctgcct
aagtacccgattcctgatgggatgacgatggatcagttttttgctgatgtatcctggaag
gggctggaagagcggcttgatattttattggataaagatgctcctgattatgctgaaaag
cgtaagccctatgaagaacggatggtctttgaactcgatatcattacgcagatgggtttc
ccgggctactttctgatcgtaatggacttcattcagtggggtaaagataacggcgtacct
gttggtcctggtcgagggtcaggtgcgggctcgctggttgcttatgcgcagaagattacc
gaccttgatccgcttgaatatgacttgctattcgaacggttcttgaatccggaacgggta
tcaatgcccgatttcgatatcgatttctgcatggataaccgggataaggttatcgattat
gtagcagaaacttacggccgtgatgccgtatctcagattgtaacttttggtacgatggcg
gcgaaagcggttgtacgtgatgttgcccgggtgcagggtaagccctttggtctggccgat
aaactgtctaagctgattccgtttgagattggcatgacgctgaccagggctatggatgaa
gagcctttgatgcgggagtttgttgagggtaacgaagaagcccaggaaattatggagatg
gcctttaagttagaaggtctgacccgaaatgtgggtaagcatgccggaggtgtggtaatc
gcaccgactaagttgactgacttctctgctacttattgtgatgaactggggcaggggttg
gtcactcagttcgacaagaacgatgtcgaggaagcggggttggttaagtttgacttcctg
ggtctgcgtaccttgactattgtcgactgggcggtcaaaaccatcgatcgtatacgggcg
aaaacgggcgaagaaccgttggatattgctctgatcgatcttgaagaccgaccgaccttt
gatctgttgcaatcggctgaaaccactgcggtatttcagcttgagtccagcggcatgaaa
gatctggtgcgccgtttgcagccggatcgctttgaagatattgtcgctttggtggcgcta
ttccggccaggcccgcttcagtcaggcatggtggacgactttatcctacgaaagcatggt
caggctgaattggcatacccccatgctgactaccagctggatagcctgcagccagtattg
gaacctacttacggtattatcctgtatcaggaacaggtcatgcagatcgctcaggtgatg
gcaggctataccctgggtggtgcagatatgctccgtcgggcgatgggtaagaaaaaacct
gaagagatggctaaacagcgtacctcttttcttgaggggtcagagcagaacggtattgat
gctgatctggcgggtaatatctttgatctggtagagaaatttgccggctatggcttcaac
aaatcccactcggccgcttatgcgttggtgtcctatcagaccgcatggttgaaaacgcat
tatccggcgcctttcatggcagcagtattgtcatctgatatgcagaacaccgataaagtg
gtgatcttcgttgaagagtgccgcaccatgaagttgccattagtgttgccggatgtgaat
ttcggtgagtatatgttcaccgtgaatgatgagggtgaaatcgtctatggtctgggggct
gtcaagggcgttggtgaggggccgatagaggcgatagttgaagctcgcaatgacggtggc
gaattttccgatatttttgatttttgtaagcgtgtgggcagtaaaaagctgaataaacgt
gttttggaggcgttggtacgctccggagcgctggatcatatggggcctgatcgggctcaa
atctgggcctgtatacccgaagctctgaaagcagcagatcagtcggaacgcaatcagaat
gcaggaatgtttgatctgtttggtgaggttgaagctgagcagccgagagatccttacgcc
gagtatatgaagctccgtaagtggaccgataaagagcgcttgcagggcgaacgagagact
ttgggtctctatgttaccgggcatcccattgatgaatatgaatccgaattgccgcacttt
atctccaagcgcatcggtgagctgcagcctcagcgggggcagcagcagaagatgttaggc
ctggtggtggatgttcgggttatgaaaacgaagaaaggcgacccgctgtgtttcgttacc
ctggatgaccgcacttcgcggattgaagtctctttgtttggtgaggcttacgatgagtac
cggactgtattggtcaaagatgctgtgttgctaattgagggtgaaattactgtcgatagc
tattccggtacggataaacttaaagtacgaggtaattccgttgttgatattacccagtgc
agagcgcggtatggtaagcatatagagatagattgtgatgagcagcagctgcgggagcgt
cctttgaaggcctttggtgaactgcttacagcgcataaaagcagtgtaaaaatgcctgtt
gcattgaagtatagccgcattgatgcctctgcactcctgacgttgggtgaagcctggcaa
gtaccgccaaccgatgaactgctgcttaaactgaaagaccagtttggtggtgatgcggtc
cgtattcgctattga
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