Amphritea japonica: AMJAP_1041
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Entry
AMJAP_1041 CDS
T06992
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ajp
Amphritea japonica
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ajp03009
]
AMJAP_1041 (srmB)
Enzymes [BR:
ajp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMJAP_1041 (srmB)
Ribosome biogenesis [BR:
ajp03009
]
Prokaryotic type
rRNA helicases
AMJAP_1041 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBB25638
UniProt:
A0A7R6P1V4
LinkDB
All DBs
Position
complement(1174375..1175670)
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AA seq
431 aa
AA seq
DB search
MFFIDLNLDLEILGPLADNNFLSPRPIQEQAIPVALEGVDLLASAPTGTGKTLAFVLPAL
QKIFDAEPDRSSAPQILILTPTRELAKQIHQVVELQTQNNRIKSCLIVGGVPFGMQKGML
AEPIDIMVATPGRLLELNAQEWLDLSLVDMLIIDEADRMLDLGFIHDIKQIADVLPLERQ
TLMFSATLEGEKIQQFATDLLNEDSQIVAVEQPRHIPSNIEQFVYRADNEQHKEYLVKAL
IHQPELKQGIIFVNSRKQVEQWVEIVRSGGMQCYGLHGDMRQSERNQRIKEMRRGRIKLI
IATDVVGRGLDLPDLTHVINLYLPMKADSYVHRSGRSGRDGAKGTVWSIVEPLDWSTLGK
IERFIGEKIPRITFPGLAPKKPEPGKGSGKPKAKKPKVKNKKAIKKAAAKKASSQKKGPK
KRVGRGPKAPK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgttctttatcgacctaaatctggatctggaaatactgggcccattagctgacaacaac
ttcctcagcccccgcccaatccaggaacaggccattcctgtcgcactggaaggcgttgac
cttctggcttcagctccgactggaaccggtaaaacccttgcctttgtattgcccgccctg
cagaaaattttcgatgcagagcccgatcgcagcagcgctccgcaaatactgatactcacc
ccaacccgggaactggcaaaacagatccaccaggttgtcgaactgcagacccagaacaac
cgtatcaaaagctgccttattgtcggcggtgtcccttttggcatgcagaaaggcatgttg
gctgaaccgattgatattatggttgccacgccggggcgtttgcttgaactgaatgctcag
gaatggttggatctgtctctggttgatatgttgatcatcgatgaagccgatcggatgctc
gatctgggctttatacacgatatcaaacagatcgctgatgtattgccgctggaacgccag
acgctgatgttttccgccaccctcgaaggggaaaaaatccagcagttcgctactgatctc
ttgaatgaagattcacagattgtagctgtagagcaacctcgtcatattccatccaatatc
gagcagtttgtttaccgggctgataatgagcaacacaaagagtacctggtaaaagcgctg
atccatcagccggaactgaaacagggcatcatctttgtaaatagtcgcaaacaggtcgag
caatgggtagagattgttcgcagtggcggtatgcaatgttatggcctgcacggcgatatg
cgccagagtgagcggaatcagcggatcaaagagatgcgtcgtggacgcattaaactgatc
atcgccactgacgttgtcggccggggcttagatctgcccgacctgactcacgtaattaac
ctctatctaccgatgaaagcagatagctacgtacaccgctcaggacgttcaggccgtgat
ggcgcgaaaggcactgtatggtcaattgtagaaccgctggactggtcgacactgggtaag
atcgagcgtttcatcggcgaaaaaatcccccgaataaccttcccaggtctggctccgaaa
aaacctgaaccgggtaaaggtagcggtaaacctaaggccaagaagcccaaagtaaagaac
aaaaaagcgataaagaaagctgcagctaagaaagcctcttctcagaaaaaaggacctaag
aaacgagtaggtcggggcccgaaagcgccgaagtag
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