Amphritea japonica: AMJAP_1395
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Entry
AMJAP_1395 CDS
T06992
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ajp
Amphritea japonica
Pathway
ajp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMJAP_1395 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajp03019
]
AMJAP_1395 (deaD)
03009 Ribosome biogenesis [BR:
ajp03009
]
AMJAP_1395 (deaD)
Enzymes [BR:
ajp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMJAP_1395 (deaD)
Messenger RNA biogenesis [BR:
ajp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMJAP_1395 (deaD)
Ribosome biogenesis [BR:
ajp03009
]
Prokaryotic type
rRNA helicases
AMJAP_1395 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
BBB25990
UniProt:
A0A7R6SS95
LinkDB
All DBs
Position
complement(1599328..1601070)
Genome browser
AA seq
580 aa
AA seq
DB search
MSDTPVAFSDLELPSTVLKSITELGYETPSPIQAECIPLLLNGQDVLGMAQTGTGKTAAF
ALPLLSRIDLKNNKPQVLVLAPTRELAVQVAEAFQAYARHIPGFHVLPIYGGQSYTLQLK
QLRRGPHVVVGTPGRVMDHLDRGTLKLDELQAMVLDEADEMLRMGFIDDVETIMAKTPAT
RQTALFSATMPEQIRRITKRYMREPQEVKIASKTTTMENIEQKCWIVSGTNKLDALVRIL
ETDEFGGIIIFARTKTATTELAEKLEARGYAAAALNGDMNQQLRERTVQRLKDAKLDILV
ATDVAARGLDVERVGLVVNYDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERRLLKQI
ERATRQPIKQMDLPSRDLVQNKRLESFREQVSNIVSKEDIAPYRELVDQLAVDTELETLD
LASALLYMAQKEKPLILPPEPEPRPRRERDDRDNDRGEKRERINYADLDVYRLEVGRSDG
VQVKNIVGAIANEADINSRHIGDIRLHDSYSTVQLPKGMPPEVLQQLKGVFICRKKIDIS
LMEGEIARPAPRKPRGEYKGKGRGGNDRGAPRKPRPRRDA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacacaccagtcgcgtttagcgatcttgaactcccctctaccgttcttaaatcc
attacagagcttggttacgaaacaccttctccaatccaggctgaatgtatcccattgctg
ctgaacgggcaggatgttctggggatggcacaaacaggtaccggtaagacagctgcattt
gcactgcccctgctaagccgtatcgatctgaagaacaacaaacctcaggtactggtactg
gctccaacacgcgagcttgcggttcaggtagcagaagcctttcaagcatatgcacgtcac
attcccggcttccatgttctaccaatctacggcggccagagctacacgctacagttaaaa
caattgcgccgtggcccacacgttgttgttggtacaccaggccgtgtcatggaccacctg
gaccgcggcactctgaagctggacgagcttcaggcaatggtactggacgaagccgacgaa
atgctgcgcatgggctttattgatgatgtcgaaaccatcatggctaaaaccccggctacg
cgccaaacagcgctattctcagcaactatgcctgagcagattcgtcgtatcacaaaacgt
tacatgcgcgagcctcaggaagttaaaatcgcttccaaaaccaccacgatggaaaatatc
gagcagaagtgctggatcgtttctggcactaacaagcttgatgcgctggtgcgcatcctg
gaaacagatgaatttggcggtatcattatcttcgcccgcaccaaaacagccaccactgag
ctggctgaaaagcttgaagcccgtggctatgctgctgctgcattgaatggcgatatgaac
cagcaacttcgggagcgcaccgtacagcgcctgaaagacgccaagctggacattctggta
gcaactgacgttgctgcccgaggcctcgacgtagaacgtgttggtctggttgtaaactac
gacattccttatgataccgaagcttatgtccaccgtattggtcgtaccggccgcgccgga
cgcgatggcaaagcaattctatttgttgctccgcgtgagcgccgcctgctgaagcagatt
gagcgcgctacacgccaaccgatcaagcagatggatcttccatcacgcgatctggttcaa
aacaagcgtctcgaatctttccgcgaacaagtaagcaatatcgtcagcaaagaagatatc
gctccttaccgtgaactggttgatcagctagcggttgatactgaactggaaacgctggat
ctggcctcagccctgttatacatggcacaaaaagagaaacctttaattctgccgcctgag
ccggaacctcgtccacgccgtgaacgtgatgatcgcgataacgatcgcggtgaaaaacgt
gaacgcatcaactatgctgacctggatgtttatcgcctggaagtaggtcgcagtgatggc
gtacaggttaagaacatcgttggcgctatcgccaacgaggctgatatcaacagccgccat
attggtgatattcgtttacacgatagctacagcaccgttcaactgccaaaaggcatgccg
cctgaggttctgcagcagcttaaaggtgtattcatctgtcgcaagaagatcgatattagc
ttgatggaaggcgaaatcgctcgcccggctccacgcaagccacgtggcgagtataaaggc
aaaggccgtggcggcaacgaccgtggcgcaccacgtaagcctcgcccacgtcgtgacgct
taa
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