Amphritea japonica: AMJAP_1542
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Entry
AMJAP_1542 CDS
T06992
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ajp
Amphritea japonica
Pathway
ajp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMJAP_1542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajp03021
]
AMJAP_1542
03019 Messenger RNA biogenesis [BR:
ajp03019
]
AMJAP_1542
Transcription machinery [BR:
ajp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMJAP_1542
Messenger RNA biogenesis [BR:
ajp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMJAP_1542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
AAA
ABC_tran
AAA_19
Rad17
AAA_16
AAA_22
AAA_24
AAA_30
AAA_25
ResIII
nSTAND_NTPase5
NACHT
ATPase_2
AAA_11
nSTAND3
cobW
AAA_17
Motif
Other DBs
NCBI-ProteinID:
BBB26137
UniProt:
A0A7R6P9Z2
LinkDB
All DBs
Position
1747405..1748361
Genome browser
AA seq
318 aa
AA seq
DB search
MTRKILSLKTKRNKDTKPVDDETRDECQGDPEKRFMSGVAIHPAPQICLESGSQQLSMRA
MDLITPIGMGQRGLIVAPPGSGKTTTLKHICQAVGKAYPEIKLYALLIDERPEEVTDFKR
SVTAQVHASSSDESYAQHVRVANDLLKVARKEAGEGHDVMIVIDSLTRLSRVHNAERKSS
GRTMSGGVDARALEIPRKLFGAARNIENGGSLTILATVLVDTGSRMDQVIFEEFKGTGNM
EIVLSREIANYRVFPALDIAKSSTRREELLLNAKDIQNIRALRRGLTHLKPVEGARKLVE
LLEQFPTNAELLSATSSD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaaaaatattgtctttgaaaacaaagagaaacaaagacacaaaacctgtggat
gacgagacccgggacgagtgtcagggtgacccggaaaaacgttttatgagtggtgtcgct
atccatcctgctccgcagatctgtctggagtcgggttctcaacaactctctatgcgagcg
atggatctgatcacgcccatcggaatggggcagcgggggctgattgttgctccgccaggg
tctggaaaaaccactacgttaaagcatatttgtcaggcagtgggtaaggcttatcccgag
ataaagctatacgcgttacttattgatgagcgtccggaagaggtgaccgattttaagcgt
agcgtgacggcacaagtgcatgcctcatcttcggatgaaagctatgctcaacatgtccgt
gtagcaaatgacctgcttaaagttgcccgaaaagaagcgggtgaaggtcatgatgtaatg
attgtgattgattctctcacaaggctttcgcgtgtacataatgcagagcggaagagtagt
ggccggacgatgtcgggtggggttgatgccagagcgttagagatcccccggaaactgttt
ggtgcagccagaaatattgagaatggcggatcgcttacgattttggcgaccgtgcttgtc
gatacaggaagccggatggatcaggtcatatttgaagagttcaaaggcaccggtaacatg
gaaattgttctatcacgggagattgctaattaccgggtttttcccgcactggatattgcc
aaaagcagcacccggcgggaggagcttctgttgaatgcgaaagatattcaaaacatcagg
gcattgcgaagggggctcacacatcttaagcctgtcgagggagccagaaagctggttgaa
ttattagagcagtttccaacaaacgcagagctgttgagcgctacctcaagcgattag
DBGET
integrated database retrieval system
