Amphritea japonica: AMJAP_3205
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Entry
AMJAP_3205 CDS
T06992
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ajp
Amphritea japonica
Pathway
ajp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMJAP_3205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajp03021
]
AMJAP_3205 (rpoC)
03400 DNA repair and recombination proteins [BR:
ajp03400
]
AMJAP_3205 (rpoC)
Enzymes [BR:
ajp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMJAP_3205 (rpoC)
Transcription machinery [BR:
ajp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMJAP_3205 (rpoC)
DNA repair and recombination proteins [BR:
ajp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMJAP_3205 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBB27790
UniProt:
A0A7R6STY8
LinkDB
All DBs
Position
complement(3634603..3638829)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLLKSQGQNDEFDSIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIDPGMTTLERGQLMNDEQYFEALEEFGDDFDARM
GAEAVQELLKSIDLAEEIEVMREELPATNSETKIKKLSKRLKLLEGFHTSGNKPEWMILQ
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLELRGHATTIKAAKKMVEREEALVWDILDEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYWMTRDRVNAQGEGTVFADIQEVQRAYGAK
QVDLQARVKVRINETIRDIEGNEEQRTTIQDTTVGRAILFNIVPTGLPFELVNQAMTKKA
ISRLINTAYRIVGLKDTVIFADQVMYMGFRQATVSGSSIGVNDFVIPDEKVEIITSADTE
VKEIEMQFADGLVTQGEKYNKVIDIWSRANEILAKKMMDNLKREEVVNREGEVEIQDSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEEDCGTEEGLIMTPLIEGGDVVVGLGDRVL
GRTVAHDVMDPSGKDVLIEAGTLMDEAWVKRLDDEERYSSIDEIIVRSAITCETAFGLCS
KCYGRDLGRGHRVNPGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSVQVKNSG
TIRMHNLKAVEKANGSLVTTSRSGELGVTDEHGRERERYKLPYGSVIKVKDGSTVEAGAI
VANWDPHTHPIISEVAGKIEFVGIDDGVTVKQQTDELTGLSTIEILDPTVRPAAGKDIRP
MIRLVDAANGGDLFHPGTDQPAQYLLPAKAILNLSNGAEVGVGDVLARIPQEGSVNKDIT
GGLPRVADLFEARKPKESSILAEISGTITFGKETKGKKRLVISPQNADPIEIMIPKWRNL
NVFEGETVEKGEVISDGPSNSHDILRIKGVAELAKYITSEIQDVYRLQGVGINDKHIEVI
VRQMLRKVDITNGGDSSFINGEQVEYHKVVEENKRLEAEGKMLAKYDRVLLGITKASLAT
ESFISAASFQETTRVLTEGAVCGKKDYLRGLKENVVVGRLIPAGTGLAYHKERKRKAQKV
DENVTVSAEDVQLALTEALNQAAMPDSE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttacttaatctgttgaaatcccagggacagaacgacgagtttgactcgatc
cgtatcggtctggcatcacctgagatgatccggtcttggtcttttggcgaagttaaaaag
ccagaaaccattaactaccgtacctttaagccggaacgtgatggtctgttctgtgccaag
attttcggtcctgttaaggattacgaatgtctgtgtggtaagtataagcgtctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttgcactggctaaagttcgtcgtgaa
cgtatgggtcacattgaactggcttctcctgtagcccacatctggtttctgaaatcactt
ccatcccgtatcggtttgatgctggatatgactctgcgtgacattgagcgggtcctgtat
ttcgaatcttttgttgttatcgatccaggtatgaccacgcttgagcgcggccagctgatg
aacgatgagcagtacttcgaagcactggaagagtttggtgacgactttgatgcccgtatg
ggtgccgaagctgttcaagagctgttgaagtctatcgatcttgcagaagagatcgaagtc
atgcgcgaagagctgccagcgacaaactctgaaactaagattaagaagctgtctaagcgt
ctgaaactgctggaaggctttcatacctcaggcaataagccagagtggatgattcttcag
gttctgccggttctaccgccagatctgcgtcctctggtaccgcttgatggcggtcgcttc
gcgacttctgatctgaacgatctgtatcgtcgtgtaatcaaccgtaacaaccgcttgaag
cgactgttggatctgagtgcaccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaatctgttgatgcgctgttggataacggtcgtcgcggtcgtgcaattaccggttctaac
aagcgtcctctaaagtccctggctgatatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgtgttgactactcaggccgttcagtaatcgtagttggaccatac
ctgcgtctgcatcagtgtggtcttcctaagaagatggcactggaactgttcaaaccattt
atcttttctaagctggaattgcgtggtcacgcgacgacgattaaagcagctaagaagatg
gtagagcgcgaagaagcgttggtttgggatattctggatgaggttatccgtgagcatccg
atcatgcttaaccgggcacctactcttcaccgtcttggtatccaggcatttgagccggta
ctgatcgaaggtaaagcgattcagctacacccattggtgtgtgctgcatacaacgctgac
tttgacggtgaccagatggcggtacacgtaccgctgacaatcgaagcgcagctggaagca
cgcgcgctgatgatgtcaaccaacaacgtattgtcgcctgccaacggtgaaccaatcatc
gtaccgtctcaggacgtagtactgggtctctactggatgacccgtgatcgcgttaatgct
cagggtgaaggcactgtcttcgctgatattcaggaagttcagcgcgcctacggtgccaag
caggttgatctgcaggcacgggttaaggttcgtattaatgaaactatccgtgatatcgag
ggtaacgaagagcagcgtacgacgattcaggatacaaccgttggtcgtgcaatactgttt
aatatcgtgccaacaggtctgccatttgagttggtaaaccaggcgatgacgaaaaaagcg
atctctcgtctgattaacacggcttatcgtatcgtcggtctgaaagatacggttatcttt
gctgaccaggttatgtacatgggcttccgtcaggcaactgtttccggttcttctatcggt
gttaacgattttgttatcccggatgagaaagtcgagatcattacttctgcagatacagaa
gtaaaagagatcgagatgcagttcgcagacggcctggttacccagggtgagaaatacaac
aaggttatcgacatctggtctcgcgccaacgaaattctggcgaagaagatgatggataac
ctgaagcgtgaagaagttgttaaccgtgagggtgaagtcgaaattcaggactcgttcaac
tcggtttacatgatggccgattccggtgcgcgaggtagtgctgctcagatccgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctctatcatcgaaacgcctatcacc
gctaacttccgtgaaggcttgaacgtactacagtactttatctcgactcacggtgctcgt
aagggtctggcagataccgcactgaaaacagcgaactccggttatctgacgcgtcgtctg
gtagacgtggcgcaggatctggtaatcactgaagaagattgtggtaccgaagaaggtctg
atcatgacgccgttgatcgagggtggcgacgttgttgttggcctgggcgatcgtgttctg
ggtcgtactgttgcacatgatgtgatggatccaagcggcaaagacgtgctgatcgaagcc
ggtactctgatggatgaggcttgggttaagcgtcttgacgatgaagagcgttactcttct
attgacgagatcattgttcgcagtgcgattacttgtgaaactgcatttggactttgttct
aaatgttacggtcgtgatctgggtcgtggacatcgggttaacccgggtgaggcagtcggt
gttatcgctgcgcagtcaatcggtgagccgggaactcagcttaccatgcgtacgttccac
atcggtggtgccgcatcacgagcagctgcagttgatagtgttcaggtgaaaaactccggt
acaattcggatgcacaacctgaaggctgtagagaaggctaacggctctctggtaacgaca
tctcgttcaggtgagctgggtgtgaccgatgagcacggacgtgagcgtgagcgttataag
ctgccttacggttctgtgattaaggttaaggacggttccaccgttgaagccggtgccatt
gttgcgaactgggatccgcatacccacccaatcatctctgaggttgcgggtaagatcgaa
ttcgttggtatcgatgacggtgttaccgttaaacagcagacggatgaattgacgggtctg
tcgactattgaaatcctggatccgactgtgcgtcctgcagcgggtaaggatattcgtcct
atgattcgtctggttgatgcggctaatggcggtgacttgttccatccgggaaccgatcag
ccagcacagtacctgttgcctgctaaggcgattctgaacctgagcaatggtgcagaggtc
ggtgttggtgatgtattggctcgtatccctcaggaaggctctgtgaacaaagacatcacc
ggtggtctgccacgggttgctgacttgtttgaggcgcgtaagcctaaagagtcgtctatc
ctggcggagatctccggcacgattacctttggtaaagagactaagggtaagaagcgtctg
gtaatctcgcctcagaatgctgatccgattgagatcatgattcctaagtggcgtaacctg
aacgtatttgaaggtgaaacggtagagaaaggtgaagtaatctctgacggtccttcaaat
tcgcacgatattctgcgtatcaaaggcgtggctgaactggcgaaatatatcacctctgaa
attcaggacgtataccgtctccagggtgttggtattaacgataagcacattgaagttatt
gttcgtcagatgctgcgtaaagttgatatcactaatggtggcgatagttcattcatcaac
ggtgagcaggttgagtatcacaaggttgttgaagagaacaagcgtctggaagctgaaggt
aagatgctggctaagtatgatcgtgtactgctgggtattaccaaggcatcgctggcaaca
gagtcatttatttcagcggcttctttccaggaaacaacccgcgtactgaccgaaggtgcg
gtatgtggcaagaaagactacctgcgtggtctgaaagaaaacgttgttgtgggacgtctg
attccggctggtaccggtctggcgtatcacaaagagcgtaagcgtaaggctcagaaagtt
gatgaaaacgttactgtaagtgcagaagacgttcaattggcgctgaccgaagcgttgaat
caggcagcgatgcctgattcagaataa
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integrated database retrieval system
