Arthrobacter jinronghuae: N2K98_02995
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Entry
N2K98_02995 CDS
T09565
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2K98_02995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajr03019
]
N2K98_02995
03400 DNA repair and recombination proteins [BR:
ajr03400
]
N2K98_02995
Enzymes [BR:
ajr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N2K98_02995
Messenger RNA biogenesis [BR:
ajr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N2K98_02995
DNA repair and recombination proteins [BR:
ajr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N2K98_02995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_11
MarR_2
ResIII
DUF3553
DUF7343
TniB
E2F_TDP
HTH_28
Cas3-like_C_2
PcrA_UvrD_tudor
Tudor_1_RapA
HTH_24
Motif
Other DBs
NCBI-ProteinID:
UWX79194
LinkDB
All DBs
Position
complement(627910..629580)
Genome browser
AA seq
556 aa
AA seq
DB search
MHVTRETLARTASEIFGWDTAREGQLEAMTAVAAGRDVLCVMPTGHGKSAVYQVPAFALP
GVAVVISPLIALQGDQADAINAAAGATRAYVLNSTQPQSAVDAAWAAAEDKDEDRRAKFL
FLAPEQLAREEVFKRLKALDVSILVIDEAHCVSAWGHDFRPDYLQLGSLAEALDRPVVAL
TATAAPPVRTEIAEVLRLKDPFLIAQGFDRPNLYLSVQMHVEADDKRQAVMESVLGLTHP
GLVYVATRRETEEYAEDLAKAGLRAAPYHSGRPAGERKEVHRQFLNDELDVVVATTAFGM
GIDKPNVRYVVHAGIPDSIDSYYQEIGRGGRDGQPAAAVLHYRPEDLGLRRFFASKRADD
QSLRQLLAALRAERGTVTQAHLSQKLGVSSRRLSGLLNLLNAAGAVTASKKGYRARRMAP
DEAVAAAVDYAERRESIDQSRVDMARQYAETSGCRRQFLLGYFGEDLPEPCGNCDNCEKA
AAEADIPVEELQVLAAAEAPNLPFPLQSTVTHSEWGPGVVMSYEEETVTVLFEAEGYKTL
SIDLVLEKELLKPRNQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcacgttacgcgggaaacgctggcccgaacggcctcggaaatcttcggctgggacaca
gcccgcgaagggcaactggaagccatgacggccgtggctgccggcagggacgtcctgtgc
gttatgcccaccggtcacgggaaatccgccgtctatcaggtgccggccttcgccctgccc
ggcgtcgccgtcgtcatttcgccgttgattgcacttcaaggcgatcaggcggacgccatt
aacgccgcagccggggctacccgtgcctatgtcctgaactccacccagccacagagcgcc
gttgatgccgcctgggcggccgctgaagacaaagacgaagaccggcgggccaagttcctc
ttcctggcccccgaacagctggcccgcgaagaagtcttcaagcggctcaaggcactggac
gtttccatcctggtgatcgatgaggcgcactgtgtttccgcatggggccacgacttccgc
ccggattacctccagctgggctcgctcgcagaagccctggaccgtccggtggtggcgctg
accgctaccgccgctcccccggtgcggaccgagattgccgaggtgcttcgcctgaaggat
cccttcctgattgcccaggggttcgaccgccccaacctctacctgtccgtgcagatgcat
gtggaggccgacgataaacggcaggccgtcatggagagcgtccttggactgacccatccc
gggctcgtctacgtggccacccgtagggaaacggaggaatacgccgaggaccttgccaag
gccgggctgcgcgccgcgccctaccactccggccggcccgccggggagcgcaaggaggtc
caccggcagttcctcaatgacgagctggacgtagtggtggccaccaccgccttcggcatg
ggcatcgacaagcccaacgtccggtacgtggtgcacgccggcataccggactccatcgac
agctattaccaggagatcggacggggcgggcgcgatgggcagccggcagccgccgtgctg
cattaccgtccggaggatctgggcctgcggcgcttcttcgccagcaaacgcgccgatgat
cagtccctccgccagctgctggccgcactgcgcgccgagcgaggcaccgtgacgcaggcc
cacctgagccagaagctgggcgtcagctcccgacggctgtccggcctgcttaacctgctg
aatgctgccggagccgtcaccgcatccaagaagggctaccgggcccgcaggatggcaccc
gacgaggcagtggcagcggcggtggactacgccgagcggcgggagagcatcgaccagtcc
cgggtggatatggcccggcagtatgccgaaacatccggttgccgccggcagttcctgctt
ggatacttcggcgaggacctgccggagccctgcggcaactgcgataactgcgagaaggcc
gcggcggaggcagacatcccggtcgaggagctgcaggtgctggcggccgcggaagcaccc
aatctgcccttccccctgcagtccaccgtcacgcactcggagtggggacccggcgtcgtg
atgagctacgaggaggagacggtgaccgtcctgttcgaagcggagggctacaagaccctg
tcgatcgacctggtgctcgaaaaggaactcctcaagccgcgaaaccagtag
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