Arthrobacter jinronghuae: N2K98_06145
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Entry
N2K98_06145 CDS
T09565
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2K98_06145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajr03019
]
N2K98_06145
Messenger RNA biogenesis [BR:
ajr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N2K98_06145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BRK
Motif
Other DBs
NCBI-ProteinID:
UWX79774
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Position
1321201..1322901
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AA seq
566 aa
AA seq
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MSETPETAGPGLLTPPPLEAGTLRIVALGGLGEIGRNMAVFEIDGKLLIVDCGVLFPEET
QPGVDLILPDFSYIEDRLDDVVGVVLTHGHEDHIGAVPYLLRLKNDIPLIGSQLTLALVE
AKLQEHRIKPFSLTVTEGQIEQLGPFECEFVAVNHSIPDALAVFIRTEAGTVLHTGDFKM
DQLPLDGRITDLRAFARLGEEGVDLFMADSTNADVPGFTTAEREIGPVLQELFGKVDKRI
IVASFSSHIHRVQQVLDAAAAHNRFVCFVGRSMVRNMAIAEKLGYLHVPEGILVDLKNVD
DLPDNKVVLMSTGSQGEPMAALSRMANGDHRIRIGKGDTVILASSLIPGNENAVFRVING
LMRLGADVVHKGNAKIHVSGHAAAGELLYCYNILRPKNAMPVHGETRHLIANGRLAAATG
VPEQNIILADDGTVVDLRDGKARVVGEVECGFVYVDGSSVGAITDTDLKDRRILSEEGFI
SIISVVNRSTGTIVSGPEIHARGFAEGDAVFDEIIPKISAALEEAVRSNTDHTTYQLQQV
VRRVVGTWVNRRLRRRPMIVPVVVEA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacccccgaaaccgccggacccggcctgctgaccccgccgccgctggaggca
ggaaccctgaggatcgtcgcgttgggcggcctcggggaaatcggccggaacatggccgtc
ttcgaaatcgacggcaagctgctcatcgtggactgcggtgtcctcttccccgaggaaacc
cagcccggcgtcgacctcatcctgccggacttctcctacatcgaggaccgcctggacgac
gtggtcggcgttgtgctcacccacggacatgaggaccacatcggcgcggtgccgtacctg
ctgcggttgaagaacgacattccgctgatcggctcgcagctgacgctggcgctggtggag
gcgaagctgcaggaacaccgcatcaagccgttctccctgaccgtcaccgaggggcagatc
gaacagctcggcccgttcgagtgcgaattcgtagcggtcaaccactccatccccgatgcg
ctggccgtgttcatccgcaccgaagccggcaccgtgctgcacaccggcgacttcaaaatg
gaccagctgcccctggacggccggatcaccgacctgcgcgccttcgcccggctgggcgaa
gagggcgtggacctgtttatggccgactccaccaacgccgacgtccccgggttcaccacc
gcggaacgcgaaatcggcccggtgctgcaggaactgttcggcaaggtggacaagcggatc
atcgtcgcttccttctcctcccacatccaccgcgtccagcaggtcctcgacgccgccgcc
gcgcacaaccggttcgtctgcttcgtcggccggtccatggtgcgcaacatggccatcgcc
gaaaagctcggctacctccatgtacccgagggcatcctcgtggacctgaagaacgtcgac
gacctgccggacaacaaggtggtgctgatgtccaccggatcccagggcgagcccatggcg
gccctgtcccggatggcgaacggcgaccaccggatccgcatcggcaagggggacaccgtc
atcctggcctcgtcgctgattcccggcaacgaaaacgccgtgttccgggtgatcaacgga
ctcatgcggctgggcgccgacgtcgtacacaagggcaacgcgaaaatccacgtctccggg
cacgccgccgccggggaactgctctactgctacaacatcctgcggccgaaaaacgccatg
ccggtgcacggcgagacgcggcacctcatcgccaacggccgcctggccgccgccaccggt
gtccccgagcagaacatcatcctggccgacgacggcacggtggtcgaccttcgcgacggc
aaggcccgcgtggtcggggaagtggagtgcggcttcgtctacgtggacgggtccagcgtc
ggagcgatcaccgacaccgatctgaaggaccggcggatcctcagcgaggaaggcttcatc
tccatcatttccgtggtgaaccgcagcaccggcaccatcgtctccggccccgagatccac
gcccgcggctttgccgagggtgacgcggtcttcgacgagatcatccccaagatcagtgcc
gccctggaagaggcggtgcgctccaacaccgaccacaccacctaccagctgcagcaggtg
gtccggcgggtcgtgggcacgtgggtcaaccgccgcctgcggcgccgtcccatgatcgtg
ccggtagtggtcgaagcctag
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