Arthrobacter jinronghuae: N2K98_11405
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Entry
N2K98_11405 CDS
T09565
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ajr
Arthrobacter jinronghuae
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ajr03016
]
N2K98_11405
Enzymes [BR:
ajr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N2K98_11405
Transfer RNA biogenesis [BR:
ajr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N2K98_11405
Prokaryotic type
tRNA splicing ligases
N2K98_11405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LppC
Motif
Other DBs
NCBI-ProteinID:
UWX77588
LinkDB
All DBs
Position
complement(2425505..2426677)
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AA seq
390 aa
AA seq
DB search
MEQQVNDKYLNFASVIDDVTLEQNVKTSRMPFIYPHLASMPDAHLGKGAAVGSVIPTLGA
IIPAAVGVDIGCGMIAVRTQLFASDIAGRNRRILRESIEHAIPLSAGNNNRSLTDSARLR
VEELADDAAAAGFDPASYLKGWRLQLGTLGSGNHFIEVSLDEEDAVWLFLHSGSRGVGNK
IAQQHIWAAQNYCGKRSIDLPDRDLAYLEEGTEEFDRYIAELMWAQKFALLNREEMMDRV
VGCFSAWAGEAVQERERINCHHNYTEVEHHYGRDVWLSRKGAIDASPGRPGLIPGSMGTA
SYVVEGKGYAPSLNSAPHGAGREYSRTRARKTFSQEQLRKAMKGIEFRDTPAFIDEIPAA
YKDIDAVMADAKDLVTVKHVLRQIVNVKGN
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
gtggaacagcaggtcaacgacaaatacctcaacttcgcgagcgtcattgacgacgtcacc
ctggagcagaacgtcaagacatccaggatgccgttcatctatccgcacctggcttccatg
ccggacgcgcatctggggaagggcgcagctgtcggatccgtgattcccacgctgggggca
atcatccccgcggcggtgggcgtcgatatcggctgcggcatgatcgccgtccggacccag
cttttcgcctcggatattgccggccgaaaccgccggatcctgcgtgaatcgatagaacat
gccattccgctttcggccggcaataacaaccgcagcctcacagactcggcacgtctccgg
gtggaggaactggccgacgacgccgctgccgccggctttgaccccgcctcgtacctcaag
ggctggcgcctccagctgggcacgctggggtcggggaaccacttcatcgaagtgtcgctg
gacgaagaggacgccgtctggctgttcctgcattcaggctcgcgcggcgtcgggaacaag
atcgcccagcagcacatctgggcagcccagaactactgcgggaagcggtccatcgacctg
ccggacagggacttggcctacctcgaagaggggacagaggagttcgaccggtacattgcc
gaactgatgtgggcgcagaaattcgccctgctcaaccgcgaggaaatgatggaccgggtc
gtgggatgtttcagtgcctgggctggggaggccgtgcaggagcgggaacggatcaactgc
caccacaactacaccgaggttgagcaccactacggcagggatgtctggctctcgcggaag
ggtgccattgacgcgtcgccggggcgtccgggactgatcccgggatccatgggtacggcg
tcgtacgtggtggaaggcaagggttacgcgccgtcgctgaactccgcaccgcacggcgcc
gggcgggagtattccaggaccagggcgcgcaagaccttcagccaggagcagctgcggaag
gcaatgaaggggattgagttccgcgacacccccgcattcattgatgagatcccggcagcg
tacaaggacatcgacgccgtgatggcggacgcgaaggacctggtcacggtgaagcacgta
ctgcggcagatcgtgaatgtgaagggaaactaa
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