Arthrobacter jinronghuae: N2K98_11880
Help
Entry
N2K98_11880 CDS
T09565
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ajr
Arthrobacter jinronghuae
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajr03019
]
N2K98_11880 (hrpA)
Enzymes [BR:
ajr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N2K98_11880 (hrpA)
Messenger RNA biogenesis [BR:
ajr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N2K98_11880 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
WHD_HA2
AAA_19
AAA_23
ABC_tran
nSTAND3
PhoH
AAA_30
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
UWX77677
LinkDB
All DBs
Position
2529543..2533451
Genome browser
AA seq
1302 aa
AA seq
DB search
MALTISYPEQLPVSERREDIMAAIAANQVTVIAGETGSGKTTQIPKMCLELGLAENGLIG
HTQPRRLAARTVAERIASELDVELGEEVGFQVRFTGETGRKTKVKLMTDGILLAEIRHDP
KLKKYSTIIIDEAHERSLNIDFILGYLRRLLPQRPDLKVIITSATIDPQRFAEHFALNGT
PAPIIEVSGRTFPVEIRYRPLNQPADGGSDEDGMDDELEEDRDPVDAVCDAVDELSREAP
GDVLVFFSGEREIRDAAEALRSSVSRNPRLANTEILPLFARLSLAEQHKVFSPGRNRRIV
LATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRSGRCGRVSD
GIAIRLYSQEDFESRPEFTDPEILRTNLAAVILQMAAMGVAKGPKDVADFPFVQPPDSKA
INDGAVLLRELGALHPQGGITEVGRKLSQLPVDPRLGRMIVEAGNRGCTKEVMVLTAALT
IQDPRERPSKDDPARAQKAAETHKRFVDENSDFTGFLNLWRYVEEKQKELSSSAFRRLCK
NEFLNFLRIREWQDLFAQLRQLAKPLGITLAPEPVDPVGKYREIHMSLLAGLLSHIGLYD
QRKREYAGARGTRFAVFPGSALFKKSPDWVMAAELVETSRLWARVAAKFDPLWAEEVAPH
LVKRSYSEPHWSKSRGAVMAYEKVTLYGVPVVPQRSINYGRIDPVLSREMFIRHALVEGD
WRTHHKFFHRNQALLAEVEELENRVRRRGLRVDDETLFEFYDERVGADVVSERHFDKWWK
HARHENPSLLDFDPDALRTDDAEGLDENDFPKSFFYGSFELPLTYEFTPGVPSANDGVTV
EVPVLFLNQLTPGPFTWQIPGLRAELITALIKSLPKAVRKNFVPAPDVARSAAAALAADF
DPASDELEPSLELVLRRLKGSIIPPGSWNWDAVPGHLRMTFTVVDSAGRVLDEGKDLAAL
QESLAPATRRAIAESLGATPSTVQPRGPKGPNGKGKAGTGNGSNNGSATGSSVAEQTGLT
EWSIGTLEKQVQRLVAGHTVTGYPALVDEGSTAGVRIFQSAGEQQAAMRAGVIRLLVLRV
PSPAKYVLEHLSNTEKLTFSQNPHGSVAALIEDCTLAAVDKLTPEKLPWTRAEFDALYET
VRAELIDTVFTVTAIVEKILASTRRITKALKGTTSLALISALNDIRAQLDALVYPGFVAR
TGYAQLMHLPRYLAGIERRLEKLPGNVQRDGLSMAVVHRLEDEYDDAVAALAPGRGTPPE
LAEVRWLIEELRISFFAQELGTARTVSEKRIRTALNSALAPA
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcactgacaatttcctatcccgaacagctgcccgtttccgagcgccgcgaagacatc
atggcagcgattgccgccaaccaggtcaccgtcatcgcgggcgaaaccgggtccggaaaa
accacgcagattccgaagatgtgcctggaactgggcctggccgagaacggcctgatcggg
cacacccagccccggcggcttgccgcgcgcaccgtcgccgagcggatcgcctccgagctc
gacgtcgagctcggcgaggaggtgggcttccaggtccgcttcaccggtgagaccggccgg
aaaaccaaggtcaagctgatgaccgacggcatcctgctggccgaaatccggcatgatccg
aagctgaagaagtacagcaccatcatcatcgatgaggcccacgaacgcagcctgaatatc
gacttcatcctcgggtacctgcgccggctgctgccccagcgcccggacctgaaggtcatc
attacctcggccaccatcgatccgcagcggttcgccgagcatttcgcgctcaacggcacc
ccggcgcccatcatcgaggtgtccggccggaccttcccggtggagatccgctaccgcccg
ctgaaccagccggcggacggtggcagcgatgaagacggcatggacgacgagctggaagaa
gaccgggacccggtggacgccgtctgtgacgccgtcgacgagctctcccgcgaggcgccc
ggcgacgtcctggtgttcttctcgggcgagcgggaaatccgtgatgccgcagaggccctg
cgttcctccgtttcgcgcaatccccggctggccaataccgagatcctgccgctcttcgcg
cggctttccctggccgagcagcacaaggtcttttccccgggccggaaccgccggattgtc
ctggccaccaacgttgccgagacctccctgacggtccccggcatcaaatacgtcatcgac
accggcacggcccgcatctcgcgctattcccaccgcaccaaggtccaacggcttccgatc
gagcggatctcccaggcctcggccaaccagaggtcaggccgctgcggacgcgtttccgac
ggcatcgccatccgactgtattcgcaggaggacttcgagtcccggcccgaattcacggat
cccgaaatcctgcgcaccaacctcgccgccgtgatcctgcagatggcggccatgggcgtg
gccaaggggcccaaggacgttgccgatttcccgttcgtccagccgccggattccaaggca
atcaacgacggcgccgtgctgctgcgcgaactcggggcattgcacccccagggcggaatc
accgaggtaggccgcaagctgtcgcagcttccggtggatccccggctgggccggatgatc
gttgaagccggcaaccgcggctgcaccaaggaagtcatggtgctcactgccgccctgacc
attcaggatccgcgcgagcgtccctccaaggatgatcccgcccgggcacagaaggccgcc
gaaacgcacaagcggttcgtggacgagaactcggacttcaccggcttcctgaacctgtgg
cgctatgtggaggaaaagcagaaggagctctcctcctcggccttccgccgactgtgcaag
aacgagttcctgaacttcctgcgcatccgtgaatggcaggacctgtttgcccagctgcgc
cagctggccaagccgctgggaatcacgctcgccccggagccggtggacccggtcggcaag
taccgggagatccacatgtccctgctggccggcctgctcagccacatcggcctctacgac
cagcgcaagcgcgaatacgccggtgcacgcggtacccggttcgcggtgttcccgggctct
gcgttgttcaagaagtccccggactgggtgatggccgccgaactcgtggaaacctcgcgc
ctgtgggcgcgggtggcagcgaagttcgatccgctgtgggccgaggaagtggcccctcac
ctggtcaagcgcagctacagcgaaccgcactggtccaagagccgcggagccgtgatggct
tacgagaaggtcaccctctacggcgtacccgtggttccgcagcgcagcatcaactacggc
cgcatcgacccggtgctctcccgcgagatgttcatccgccacgccctggtcgaaggcgac
tggcgtacgcaccacaagttcttccaccgcaaccaggcactgctggccgaggtggaggag
ctggagaaccgggtccggcgccgcgggctgcgcgtggatgacgaaaccctcttcgagttc
tacgacgagcgggtgggcgccgacgtcgtgtccgagcggcacttcgacaagtggtggaag
cacgcccggcacgaaaacccgtccctgctggacttcgacccggacgccctgcgcacggac
gatgccgagggactcgacgagaacgacttcccgaagtccttcttctacggctccttcgag
ctcccgctcacctacgaattcacccccggtgtgccctccgccaacgacggtgtcaccgtg
gaggtgccggtcctgttcctgaaccagctcacccccggaccgttcacctggcagatcccg
ggcctgcgcgccgagcttattacggccctgatcaagtccctgcccaaggcggtgcggaag
aatttcgtcccggcgcccgacgtcgcccgctcggctgccgctgcgctggctgcggatttc
gacccggcgtcggacgagctggaaccgtccctggaactggtgcttcgccggttgaaggga
tccatcattcctccgggttcctggaactgggatgccgtgccgggccacctgcggatgacg
ttcaccgtggtggattccgccggccgggtgctggacgagggcaaggacctggcggcactg
caggagtccctggccccggccacgcgccgcgccattgcggaatccctcggcgccacgccg
tccaccgtgcaaccgcgcggccccaagggccccaacggcaagggcaaggccggcaccgga
aacggctcgaacaacggctcagccaccggttcctccgtggcagagcagaccggcctgacc
gagtggagcatcggcaccttggagaagcaggtccagcggctcgtggccggccacaccgtg
accggctacccggcgctggtggacgaaggcagcaccgccggcgtgcggatcttccagagc
gccggcgagcagcaggccgccatgcgcgccggcgtcatccggctgctggtgctgcgcgtg
cccagcccggccaagtacgtgctggagcacctgagcaacaccgaaaagctgaccttcagc
cagaatccgcacgggagtgtggccgcgctgatcgaggactgcaccctggccgcggtggac
aagctcacgccggagaagcttccgtggacgcgggccgagttcgacgcactgtatgaaacg
gtgcgggccgaactgatcgataccgtcttcaccgtcacggcgatcgtggagaagatcctg
gccagcacccggcggatcaccaaggcgctcaagggcaccacttcactggccttgatcagt
gccctgaatgacatcagggcgcagctggatgccctggtgtaccccggtttcgtggcccgc
accggatatgcgcagctgatgcacctgccccgctacctggccggcattgaacggcggctg
gagaagcttccgggcaacgtgcagcgggacggcctctccatggccgtggtccaccgcctc
gaggacgagtacgacgacgccgtggcggcactcgcgccgggccgcggcactcccccggaa
ctcgcggaggtccgctggctgatcgaggagctgcggatcagcttcttcgcgcaggaactg
ggaacggcccggaccgtttcggagaaacggatccggaccgccctgaattcggcgctggct
ccggcctag
DBGET
integrated database retrieval system
