Acidovorax sp. JS42: Ajs_0953
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Entry
Ajs_0953 CDS
T00455
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ajs_0953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajs03019
]
Ajs_0953
03016 Transfer RNA biogenesis [BR:
ajs03016
]
Ajs_0953
Enzymes [BR:
ajs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ajs_0953
Messenger RNA biogenesis [BR:
ajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ajs_0953
Transfer RNA biogenesis [BR:
ajs03016
]
Prokaryotic type
tRNA degradation factors
Ajs_0953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
TraK_C
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ABM41193
UniProt:
A1W4L8
LinkDB
All DBs
Position
994145..996328
Genome browser
AA seq
727 aa
AA seq
DB search
MSIFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTI
SLNPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLV
VAGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAK
DETFIAKVTALAEGKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEALLF
DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT
ERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSK
DEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIA
ATEAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVGDYLQEGQIVKVKVLETDDKGRVKLSMKALADRPAGDSGRPAPAERGERRERRDGG
ASEQQQQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttttaacaaggtcaccaagtcgttccagtggggtgacaagaccgttgtcatg
gaaacgggtgagatcgcacggcaggcctcaggcgccgtgctggtgaacattgacgacacc
gtagtgctcgctaccgtggtggggtccaagcaggccaagcctggccaggacttcttcccg
ctgacggtggactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgcgaggccaagcccagcgagttggagacgctgaccagccgcctgatcgatcgcccg
atccgcccgctgttccccgagggcttctacaacgaggtgcatgtggtcatccacaccatc
tcgctgaaccccgaagtggacgctgacatcgccgccatgatcgccgtgagcgcagcgctg
tccgtttccggtattccgttcaatggccccatcggcgccgcacgcgtgggctacgtcaat
ggcgaatacgtgctgaaccccgggcagaccgcgcgcaagagctcgcagctggacctggtg
gtggcgggcaccgaggccgctgtgctgatggtggagtccgaagcgcagcagttgtccgaa
gagatcatgctgggcgccgtggtgttcggccacgagcagggcaaggtggcgatcaacgcc
atccatgagctggtgcgcgacgctggcaagcccgtgtgggactggcagccgcctgccaag
gacgagactttcatcgccaaggtcacggccctggcagagggcaagctgcgcgcggcttac
cagatccgcagcaagcaggcccgcacccaggcactgcgcgaggcatcggcctcggtgctg
gaatcgctgaagggcgagggcgtggagttcgacgccgtgaaggtcgaggccctgctgttc
gacatcgaagccaagatcgtgcgcagccagatcctggccggcgagccccgcatcgacggc
cgcgacacgcgcaccgtgcgtcccatcgagatccgcaactccgtgctgccccgcacccac
ggctccgccctgttcacgcgtggcgaaacccaggcgctggtggtgtccacgctgggcacc
gagcgcgatgcgcagcgcatcgacgcactggccggcgagttcgaagaccgtttcatcttc
cactacaacatgcctcccttcgccacgggtgaagtgggccgcatgggctcgaccaaacgc
cgcgaaatcggccacggccgcctggccaagcgcgccctggtggcctgcctgccgagcaag
gacgagttcccctacaccatccgcgtggtgtcggagatcaccgaatccaacggctcctcg
tccatggcatcggtctgcggcggctgcctgtcgctgatggatgccggcgtgcccatgaag
gcgcacgtggccggcatcgccatgggcctgatcaaggaagacaaccgcttcgccgtactg
accgacatcttgggcgatgaggaccacctgggcgacatggacttcaaggtggccggtacg
accaacggcatcaccgccctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcgcaggccaaggaagcacgtatgcacatcctgggcaagatgcag
gaagccatgggtgaagccaagaccgagatctcatccttcgcgcccaagctctacacgatg
aagatcaacccagagaagatccgcgacgtgatcggcaagggcggcgccaccatccgtgcc
ctgacggacgagaccggctgccagatcaacatcgaggaagacggcaccatcaccatcgca
gccaccgaggctgccaaggctgatgaagccaagcgccgcatcgaagagatcacggctgag
gttgaagtgggcaagatctacgaaggccctgtcaccaagatcctggacttcggcgcgttg
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcccacgagcgt
gtggaaaaggtgggcgactacctgcaggaaggtcagatcgtgaaggtcaaggtgctggag
accgacgacaagggccgcgtcaagctgtccatgaaggcgctggctgaccgccccgccggc
gacagcggccgtcccgcccctgcggagcggggcgagcgtcgtgagcgtcgtgatggcggt
gcttccgagcaacagcagcagtaa
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