Acidovorax sp. JS42: Ajs_1132
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Entry
Ajs_1132 CDS
T00455
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ajs_1132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajs03019
]
Ajs_1132
Enzymes [BR:
ajs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ajs_1132
Messenger RNA biogenesis [BR:
ajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ajs_1132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABM41365
LinkDB
All DBs
Position
1190125..1191579
Genome browser
AA seq
484 aa
AA seq
DB search
MTQPYSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK
PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAI
RHVLNERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEV
DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRL
VADIEKLIKKKIELEPLELQEDRPRGRYNDGRRASGGDDSGEGAPAAPRSRERSAYRSAP
AASRDPFFDKPYEASTSAGASASWEVAPKASPARGGISANIKPKRKLPALFKAPQASTAE
PSTH
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaccctattccactcttgcgctggccgagccgctcaagcgcgccgtagccgag
atgggctacgagaacatgacgccgatccaggcgcaggcgatccctgtcgtgctgaccggc
aaggacgtgatgggtgcggcgcaaaccggcaccggcaagacggcggctttttcgctgccg
ttgctgcagcgcctgctcaagcacgagaacagttcagcctctcccgcgcgccaccctgtg
cgcgcgctcgtgctgctgcccacgcgcgagctggcggaccaggtggcgcagcagatcgcg
ctgtacgccaagtacaccaagctgcgcagcacggtggtgtttggcggcatggacatgaag
ccgcagaccatcgagctgaaaaagggcgtcgaggtgctggtggccacgcccggccgtctg
ctggaccatatcgaggccaagaacgcagtgctcaatcaggtcgagtacgtggtgctggac
gaggccgaccgcatgctggacattggcttcctgcccgacctgcagcgcatcctctcctac
ctgcccaagcagcgcaccacgctgctgttctccgccaccttctcgccagagatcaagcgc
ctggccggcagctatctgcaggacccgatcaccatcgaggtcgcgcgccccaacgagacc
gcctccaccgtggagcagcgcttcttcgcggtagacggcgacgacaagcgccgcgccatc
cgccatgtgctgaacgagcgcggcctcaagcaggccttcatcttcgtgaacagcaagctg
ggctgcgcgcgcttggcccgcagcctggagcgcgacggcctcaagaccgccgcgctgcat
ggcgacaagagccaggacgagcgactgaaggcgctggaagccttcaagagcggcgaggtg
gacctgctggtctgcaccgacgtggcggcgcggggcctggacatcaaggacgtgcccgcg
gtgttcaactacgacgtgcccttcaatgcagaggactacgtgcaccgcatcggccgtacg
ggccgcgccggcgcatcgggtctggccgtcacgttggcggccagcagcgatacccgcctg
gtggcggatatcgagaagctcatcaagaagaagatcgagctggaaccgctggaattgcag
gaagatcgtccgcggggccgctacaacgacggccgccgcgcctcgggcggcgacgattcg
ggcgagggcgctccagccgctccccgcagccgcgagcgcagcgcgtaccgctccgcgcct
gcggcgtctcgcgacccgttcttcgacaagccctacgaggccagcacctcggccggtgcg
tctgcgagctgggaggtggcccccaaggcatctcccgcgcgtggcggcatctccgccaac
atcaagcccaagcgcaaattacccgccttgttcaaggcgccgcaggcctctacggccgag
ccatcaacccactga
DBGET
integrated database retrieval system
