Acidovorax sp. JS42: Ajs_3290
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Entry
Ajs_3290 CDS
T00455
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ajs_3290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajs03019
]
Ajs_3290
03009 Ribosome biogenesis [BR:
ajs03009
]
Ajs_3290
Enzymes [BR:
ajs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ajs_3290
Messenger RNA biogenesis [BR:
ajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ajs_3290
Ribosome biogenesis [BR:
ajs03009
]
Prokaryotic type
rRNA processing factors
Ajs_3290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ABM43412
UniProt:
A0A9J9FX41
LinkDB
All DBs
Position
3472626..3475703
Genome browser
AA seq
1025 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAH
QFMAHVMPEHAGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPH
YKLERLKHDDPRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAARGATRPQGQGQQRPATAPTPAPQRPAAAPAPEQGFFAWIKSLFGFGAAPAPAP
VAAPAQTPAEPGARGEGRRGERGGRRGERTGERSGERGGERNGNREGGEGRGRRGEGRGG
ERSAEGRENREPREPRNGRDGERRGDRAEGESRREPREGRGGRERGERNAQPPVQSAADL
ANTPVTTDADVAVTEERTARTGERGERRERGERGERRERGGERRERGPRTIDANAPAAGA
DFADTAPLAALPDLDLSGAEVGTSGAEAPAGEERRERRSRDRYGRDRRERGERGPRNAEA
SATGADAEAPAAPLMDLDLPAPAAAAEEDSAPARRSYFASAPASAPAATPQAAPEATAAV
TPPPAAVPVPAPAPAPVAAAPVPAPAPAATAVAPATGGMPRVQAFTLPVDTLQQVAQASG
LQWVNSDAQKIAAAQAAIAAEPKPVHVPRERAPVVVLDEGPLVLVETRRDLGAMQLPFDQ
DNAAA
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaagccgtcgtcacgcgcgtggaaccgtcgctggaggcctgcttcgttgactat
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaaacagtacttcgccgag
ggcgtatcacccagccaggccaggatccaggacgtgatcaaggaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatcagc
ctggccggccgctatgtggtactgatgcccaacaacccgcgcggcgggggcgtgtcgcgc
cgcattgagggcgaggaccgcgccgagctcaaggaggcgatggaccagctggagtacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgttccgcgcccgagttgcaa
tgggatctgaactacctgctcaagctgtggaccgccatcgatggcgccgccaaggccggc
aagggcgccttcctcatctaccaggaatccagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggtgacatcctcatcgacactgacgacatatacgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccggcaaggtcaagcgctaccgcgacgac
gcaccgctgttctcgcgcttccagatcgagcaccagatcgagtccgcctacgcgcgcacc
gtgaccctgccctcgggcggcgccatcgtgatcgaccacaccgaggctctggtcagcgtg
gacgtgaactcggcacgcgccatcaagggcggcgacatcgaggaaaccgccacgcgcacc
aacctggaggccgccgacgaggtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggaaagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcgcgcgtgcagttcggcaccatcagcaagttc
ggcctcatggagatgagccgccagcgcctgaagccctcgctgtccgaaggcgcgcacatc
cgctgcccgctgtgcgacggcaccggccacgtgcgcgacacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacagcaccgccgccgtgcactgccag
gtgccggtggaggtggccagcttcctgctcaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtctccgtggtgctgatccccaacaagtcgctggaaacgccgcac
tacaagctggagcgcctcaagcacgacgacccgcgcctggaaaacctggacgccagctac
aagctggccgacgtggaggaagaccagaccaaggtcacgcgccgctcgcaggagcccacc
aacaagcagacgcccgtgatcaagggcgtgttgcccgacgcaccggcccctgtggccgag
ccgcgccccgaaggcgccgcccgcggcgccacgcgcccgcagggccagggccagcagcgc
ccggcaacggcccccacgcccgcgccccagcgcccggccgccgcaccggcgcccgagcag
ggcttcttcgcatggatcaagagcctgttcggctttggcgccgcacccgcgcccgcacct
gtggcggcccccgcgcagacgcccgcggaacccggcgcacgcggcgaagggcgtcgcggt
gagcgcggcggtcgccgtggcgaacgcactggtgaacgcagcggcgagcgtggcggtgag
cgcaatggcaaccgcgaaggcggcgaaggccgcggccgccgtggcgaaggccgtggcggc
gagcgcagcgccgagggccgcgagaaccgcgaaccgcgtgagccacgcaatggccgcgac
ggcgaacgccgtggcgatcgcgcggaaggtgagagccgccgcgagccgcgcgaaggccgt
ggcggccgcgagcgcggtgagcgcaacgcacagccgcccgtgcagtctgcggccgacctg
gccaacaccccggtcacgaccgatgccgacgtggcagtgaccgaggagcgcacggcacgc
accggcgagcgcggtgaacgccgcgaacggggtgaacgaggcgagcgccgtgagcgcggt
ggcgagcgccgcgaacgcggcccgcgcaccatcgacgccaacgcccccgccgctggcgcc
gactttgccgacactgcgcccctggccgcattgccggacctggacctgtccggcgctgaa
gtcggtacgtccggcgccgaggcccccgccggcgaggagcgccgcgagcgccgttcgcgc
gaccgctatggacgcgaccgccgcgaacgtggcgagcgcggcccgcgcaatgccgaggcc
agcgccaccggtgccgatgccgaagcgcctgccgcgccgctgatggacctggacctcccc
gctcccgctgcggcggccgaggaagactccgcccccgcacgccgcagctatttcgcctcc
gctccggcatctgccccggcggcaacgccgcaagccgcgcccgaagccacggccgcagtg
acgccacccccggccgccgtgccagtccccgcaccggcgcccgcgcccgttgcagcggca
cctgtgcccgcaccggctccggctgccaccgcggtagcgccggcaaccggtggcatgccg
cgcgtgcaggcattcacgctgcccgtggacacgctgcagcaggtggcgcaggcttcgggc
ctgcaatgggtgaactccgacgcccagaagatcgccgccgcgcaggccgcgattgcggcc
gagcccaagcccgtccacgtgccgcgcgagcgtgcgcccgtggtggtgctggatgaaggt
ccgctggtgctggtggaaacccgccgcgacctgggtgcgatgcagctgccgttcgaccag
gacaacgcggccgcctaa
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