Advenella kashmirensis: TKWG_09495
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Entry
TKWG_09495 CDS
T02117
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aka
Advenella kashmirensis
Pathway
aka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TKWG_09495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aka03400
]
TKWG_09495
Enzymes [BR:
aka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TKWG_09495
DNA repair and recombination proteins [BR:
aka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TKWG_09495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_25
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AFK62219
UniProt:
I3UB31
LinkDB
All DBs
Position
complement(1651818..1655123)
Genome browser
AA seq
1101 aa
AA seq
DB search
MLLCADPLQAQRLHDEVVLFDPKLRVRQFPDWETLPYDGFSPHQDLISERLKTLSALMQG
KVDVLTVPVTTALYRLAPTAFLAAYSFSFKKGDKLDEAALRDQLMLANYAHVSQVAAPGE
FCIRGGLIDLFPMGSVLPYRIDLFDDEIESIRSFDMDTQRSLYPVNEVELLPGREFPMDE
TARNHFRSRFRDLFEGDPSRAMPYKDMGNGIAFAGIEYYLPLFFDDTATLFDYLRPETIT
ITVGTIEEAIRQFYDDTQSRYRFLKSDRERPVLAPEHLFLSEEQFFVHLKSFARLHLDET
SQNAQFSPAPDIAVLRRSDDPFARLRAWLKRGEQRLLLCADSAGRRETLLQLLREQQLEP
SAAFDNVQDFVASDIDFGIAIAPLNTGFIIRDRQLCLVTENDLYPGSASVAQRRRKKQER
SSNVDAMVRDLSELREGDPVVHMQYGIGRYHGLVTMDLGEGDIELLHLQYSGNSTLYVPV
SQLHVISRYSGADPEHAPLHQLGSGQWDRARKKAAKQIRDAAAELLALYALRAAREGFSF
KLPFSDYQTFVEGFGFEETADQQAAIDAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAF
LCVANGKQVALLCPTTLLAEQHAQTFADRFADWPVRVAELSRFRSTKEVKAALDGLQDGT
VDIVIGTHKLLGKEVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDILTLTATPIPRTL
GMSLEGIRDFSVIATAPQKRLAIKTFVRREDNGTIREAALRELKRGGQVYFLHNEVETIQ
NRRARLEELLPEARIAVAHGQMPERELEEIMKGFYQQRFNILLCTTIIETGIDVPSANTI
IIHRADRLGLAQLHQLRGRVGRSHHQAYAYMLTPGEDAITSNAKKRLEAIQSLEELGSGF
FLSMHDLEIRGTGEVLGESQSGNINEIGFTMYSDLLNEAVRALKAGEEPDLETPFNSVCE
VKLHTSALLPADYCTDIHARLSLYKQLAHAKTEDDLLAIQEELTDRFGKMPEPARMLIAT
HRLRILAEALGIIKVDISDEQALLVFGPKTSADPLKMIELVQKQKHIRFSGADKLRIELN
NMPDISRRIDTIRLLLKTLAA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
gtgctgctctgcgccgatccgctgcaggcgcaacgactgcatgacgaagtggtgctgttt
gacccgaaactgcgagtgcgccagtttccagactgggaaacactgccctacgatggcttt
tcgccccaccaggatctgatttccgaaagactcaagacgctgtccgcgctcatgcagggc
aaagtcgacgttctgacggtgccggtcacaaccgccctgtatcgcctggcgcccactgcg
tttctggcggcctattccttttcgttcaaaaaaggcgacaaactggacgaggccgcgctg
cgcgaccagttgatgctggccaattatgcacacgtctcgcaagtggccgcgcccggagaa
ttctgtatccggggcgggctgatcgatttattccccatgggttcggtgctgccctaccgg
atcgacctgtttgacgacgaaatcgagtctattcgcagtttcgacatggacacgcagcgc
agcctgtatccggtcaatgaagtggaactgttgcccggccgcgagtttcccatggacgaa
accgcccgcaaccattttcgctcgcgctttcgcgacctgttcgaaggtgacccatcccgc
gccatgccctacaaagatatgggcaacggcattgcctttgcgggcatcgagtattatctg
ccactgttctttgacgataccgcaacgctatttgactatttgcgtcccgaaaccatcacg
atcaccgtgggcacaatcgaagaggccatccggcagttttacgacgacacgcaaagtcgc
taccgattcctcaaaagcgatcgcgagcggcccgtgctggcgcccgagcacctgttcctg
tctgaagaacagtttttcgttcatctgaagtcctttgcccgactacatctggacgaaacc
tctcagaatgcgcaattttcgccggcccctgatatcgccgtactcagacgcagtgatgat
ccttttgcgcgcctgcgcgcctggttaaagcgtggcgaacagcggttgctgctctgcgcc
gattcggccggtcgccgcgaaacgctgttgcaattgctgcgcgaacagcaactggagccc
agtgccgcctttgataacgttcaggactttgtggcctccgatatcgattttggcattgcc
attgcgccgctgaacaccggttttatcatccgtgacaggcaactgtgcctggtcaccgag
aatgacctgtaccccggttcggcgtcggtcgcccagcgccgtcgcaagaaacaggaacgc
agcagcaacgttgacgccatggtgcgagacctgtccgagctgcgcgagggcgatccggtc
gttcatatgcaatacggtatcggtcgctaccatggcctggtgaccatggacctgggcgaa
ggcgatatcgagttattgcatctgcaatactcaggcaacagcacgctctacgtcccggtc
tcgcaactgcacgtaatctcccgctatagcggtgctgatcccgagcatgctccgctacat
caattaggatccgggcaatgggaccgagcccgcaagaaggccgccaagcaaatccgcgat
gcggcagccgagctgctggctttgtatgcgctgcgcgccgcacgtgaaggcttttcgttc
aagctgcccttttctgactatcagacctttgtcgaaggttttggctttgaagaaacggcc
gaccagcaggccgccattgatgccgtgattggcgacatgacctccggcaaaccgatggac
cgactggtgtgcggcgatgtgggtttcggcaagaccgaagttgccctgcgcgcggccttt
ctgtgtgtcgccaatggcaaacaggttgccctgctgtgccccaccacgctgctggccgag
cagcatgcccagaccttcgcagaccggtttgccgactggccggtgcgtgtggcagaactg
tcgcgctttcgcagcaccaaggaagtcaaagcggcgctggacggcttgcaggatggcacg
gtcgatattgtcatcggcacgcataagctgctgggcaaggaagtcaaattcaagcgtctg
gggctggtcattattgatgaagaacatcgatttggtgtgcgccagaaagaagcgctcaag
gcgctgcgcgctgaagtggacattctgacgctgaccgcaacacccattccgcgtacgctg
ggcatgtctctggaaggcatacgcgacttttccgtgattgccacggcaccgcaaaagcgc
ctggctatcaaaactttcgtacggcgcgaagacaatggcaccatccgcgaagccgccctg
cgtgaattgaaacgcggcggccaggtgtacttcctgcacaacgaagtggaaaccattcag
aaccgccgcgcgcgcctggaagaactgctgcccgaagcgcgtattgccgtggcccatggc
cagatgcccgaacgcgaactcgaagagatcatgaagggcttttatcaacagcgttttaac
attctgctgtgcaccaccattatcgaaaccggtattgatgtacccagcgccaataccatc
attatccatcgcgcagaccggctgggcctggcgcaactgcatcagttgcggggtcgcgtg
ggccgctcgcaccatcaggcctatgcctatatgctcacaccgggcgaagatgccattacc
agcaatgcaaagaaacggctggaagccattcagtccctggaagaactgggctcgggcttc
tttctgtccatgcacgatctggaaatccggggtacgggcgaagtgctgggcgaatcgcaa
tcgggcaatatcaacgaaatcggctttaccatgtacagcgatctgctcaacgaagccgtg
cgggcgctcaaggctggcgaagagcctgatctggagactccgttcaactccgtttgcgaa
gttaagctgcacacttctgccctgcttccggctgattactgtaccgatatccatgcccgc
ctgtccctgtacaaacagctggcccacgccaagaccgaagatgacctgctggccattcag
gaagagcttaccgaccgctttggcaaaatgcctgagccggcgcgcatgttgatcgccacg
caccgcctgcgcattctggccgaagcgctgggcatcatcaaggtcgacatcagcgatgag
caggcgctactggttttcggtcccaagaccagcgccgacccgcttaaaatgatagaactg
gtgcaaaaacaaaagcacatccgtttttcgggggcggataaattacgcattgaactgaat
aatatgcccgacatcagtcgccgtatcgataccattcgcctgctgctcaagacactggcg
gcctga
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